[Swift-user] Exception in getFile

[Jing Tie]

Yes. There is no *avgResults.Rdata under shared directory, only input file,
scripts, wrapper.sh and seq.sh.

Jing

On 8/20/07, Mihael Hategan <hategan at mcs.anl.gov> wrote:
>
> Not much we can do if the filesystem is broken.
> Did you check to confirm that the file is not there?
>
> Mihael
>
> On Mon, 2007-08-20 at 12:07 -0500, Jing Tie wrote:
> > Hi,
> >
> > Here is another problem. It seems like something wrong with GFS
> > system.
> >
> > site: MIT_CMS
> > gatekeeper: ce01.cmsaf.mit.edu
> > app_dir: /osg/app
> > data_dir: /osg/data
> > condor_dir: /usr/local/condor/bin
> > R_dir: /osg/app/R-2.5.1/bin/R
> >
> > output:
> > Application exception: Exception in getFile
> >         task:transfer @ vdl-int.k, line: 235
> >         vdl:dostageout @ vdl-int.k, line: 378
> >         vdl:execute2 @ execute-default.k, line: 22
> >         vdl:execute @ sid-wf1.kml, line: 20
> >         wavelettransf @ sid-wf1.kml, line: 362
> >         batchtrials @ sid-wf1.kml, line: 402
> >         vdl:mains @ sid-wf1.kml, line: 399
> > Caused by: org.globus.cog.abstraction.impl.file.FileResourceException:
> > Exception in getFile
> > Caused by: org.globus.ftp.exception.ServerException: Server refused
> > performing the request. Custom message:  (error code 1)  cwtsmall
> > failed
> > Provenance graph saved in sid-wf1-7thy5mbfh09e1.dot
> > The following errors have occurred:
> > 1. Application "cwtsmall" failed (Exception in getFile
> > Caused by:
> > Server refused performing the request. Custom message:  (error code
> > 1)
> > [Nested exception message:  Nested exception is
> > org.globus.ftp.exception.UnexpectedReplyCodeException :
> > Custom message: Unexpected reply:
> > 500-Command failed. :
> > globus_gridftp_server_file.c:globus_l_gfs_file_send:2190:
> > 500-globus_l_gfs_file_open failed.
> > 500-globus_gridftp_server_file.c:globus_l_gfs_file_open:1694:
> > 500-globus_xio_register_open failed.
> > 500-globus_xio_file_driver.c:globus_l_xio_file_open:438:
> > 500-Unable to open
> > file /osgfs/data/sid-wf1-7thy5mbfh09e1/shared//101-FBchannel16_cwt-
> avgResults.Rdata
> > 500-globus_xio_file_driver.c:globus_l_xio_file_open:381:
> > 500-System error in open: No such file or directory
> > 500-globus_xio: A system call failed: No such file or directory
> > 500 End.])
> >         Arguments: "scripts/runWaveletsAvg.R, 101, FB"
> >         Host: UCSDT2
> >         Directory: sid-wf1-7thy5mbfh09e1/cwtsmall-mb3l3rfi
> >         STDERR:
> >         STDOUT:
> > Errors detected. Cleanup not done.
> > Execution completed with errors
> >         sys:throw @ vdl.k, line: 140
> >         vdl:mains @ sid-wf1.kml, line: 399
> >         at
> > org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java:413)
> >         at
> > org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java:417)
> >         at
> > org.globus.cog.karajan.workflow.nodes.GenerateErrorNode.post
> > (GenerateErrorNode.java:28)
> >         at
> >
> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted
> >         at
> > org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(
> Sequential.java :33)
> >         at
> > org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:334)
> >         at
> > org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)
> >         at org.globus.cog.karajan.workflow.events.EventBus.sendHooked
> > (EventBus.java:97)
> >         at
> > org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(
> FlowNode.java:172)
> >         at
> > org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java
> :298)
> >         at
> >
> org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.executeChildren
> (AbstractFunction.java:37)
> >         at
> > org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(
> FlowContainer.java:63)
> >         at org.globus.cog.karajan.workflow.nodes.FlowNode.restart
> > (FlowNode.java:239)
> >         at
> > org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java:280)
> >         at
> > org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(
> FlowNode.java:392)
> >         at org.globus.cog.karajan.workflow.nodes.FlowNode.event
> > (FlowNode.java:331)
> >         at
> > org.globus.cog.karajan.workflow.FlowElementWrapper.event(
> FlowElementWrapper.java:227)
> >         at
> > org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)
> >         at org.globus.cog.karajan.workflow.events.EventBus.sendHooked
> > (EventBus.java:97)
> >         at
> > org.globus.cog.karajan.workflow.events.EventWorker.run(EventWorker.java
> :69)
> >
> > Many thanks,
> > Jing
> > _______________________________________________
> > Swift-user mailing list
> > Swift-user at ci.uchicago.edu
> > http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
>
>
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