[Swift-user] Exception in getFile

[Mihael Hategan]

On Mon, 2007-08-20 at 12:21 -0500, Jing Tie wrote:
> Yes. There is no *avgResults.Rdata under shared directory, only input
> file, scripts, wrapper.sh and seq.sh.

Did the job actually run?

> 
> Jing
> 
> On 8/20/07, Mihael Hategan <hategan at mcs.anl.gov> wrote:
>         Not much we can do if the filesystem is broken.
>         Did you check to confirm that the file is not there?
>         
>         Mihael
>         
>         On Mon, 2007-08-20 at 12:07 -0500, Jing Tie wrote:
>         > Hi,
>         >
>         > Here is another problem. It seems like something wrong with
>         GFS
>         > system. 
>         >
>         > site: MIT_CMS
>         > gatekeeper: ce01.cmsaf.mit.edu
>         > app_dir: /osg/app
>         > data_dir: /osg/data
>         > condor_dir: /usr/local/condor/bin
>         > R_dir: /osg/app/R- 2.5.1/bin/R
>         >
>         > output:
>         > Application exception: Exception in getFile
>         >         task:transfer @ vdl-int.k, line: 235
>         >         vdl:dostageout @ vdl-int.k, line: 378
>         >         vdl:execute2 @ execute-default.k, line: 22
>         >         vdl:execute @ sid-wf1.kml, line: 20
>         >         wavelettransf @ sid-wf1.kml, line: 362
>         >         batchtrials @ sid-wf1.kml, line: 402
>         >         vdl:mains @ sid-wf1.kml , line: 399
>         > Caused by:
>         org.globus.cog.abstraction.impl.file.FileResourceException:
>         > Exception in getFile
>         > Caused by: org.globus.ftp.exception.ServerException: Server
>         refused
>         > performing the request. Custom message:  (error code
>         1)  cwtsmall 
>         > failed
>         > Provenance graph saved in sid-wf1-7thy5mbfh09e1.dot
>         > The following errors have occurred:
>         > 1. Application "cwtsmall" failed (Exception in getFile
>         > Caused by:
>         > Server refused performing the request. Custom
>         message:  (error code 
>         > 1)
>         > [Nested exception message:  Nested exception is
>         > org.globus.ftp.exception.UnexpectedReplyCodeException :
>         > Custom message: Unexpected reply:
>         > 500-Command failed. :
>         > globus_gridftp_server_file.c:globus_l_gfs_file_send:2190: 
>         > 500-globus_l_gfs_file_open failed.
>         >
>         500-globus_gridftp_server_file.c:globus_l_gfs_file_open:1694:
>         > 500-globus_xio_register_open failed.
>         > 500-globus_xio_file_driver.c:globus_l_xio_file_open:438: 
>         > 500-Unable to open
>         >
>         file /osgfs/data/sid-wf1-7thy5mbfh09e1/shared//101-FBchannel16_cwt-avgResults.Rdata
>         > 500-globus_xio_file_driver.c:globus_l_xio_file_open:381:
>         > 500-System error in open: No such file or directory 
>         > 500-globus_xio: A system call failed: No such file or
>         directory
>         > 500 End.])
>         >         Arguments: "scripts/runWaveletsAvg.R, 101, FB"
>         >         Host: UCSDT2
>         >         Directory: sid-wf1-7thy5mbfh09e1/cwtsmall-mb3l3rfi 
>         >         STDERR:
>         >         STDOUT:
>         > Errors detected. Cleanup not done.
>         > Execution completed with errors
>         >         sys:throw @ vdl.k, line: 140
>         >         vdl:mains @ sid-wf1.kml, line: 399 
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java:413)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.FlowNode.fail(FlowNode.java:417)
>         >         at
>         > org.globus.cog.karajan.workflow.nodes.GenerateErrorNode.post
>         > (GenerateErrorNode.java:28)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted
>         >         at 
>         >
>         org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java :33)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:334)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)
>         >         at
>         org.globus.cog.karajan.workflow.events.EventBus.sendHooked
>         > (EventBus.java:97)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent (FlowNode.java:172)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:298)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.executeChildren (AbstractFunction.java:37)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.FlowContainer.execute(FlowContainer.java:63)
>         >         at
>         org.globus.cog.karajan.workflow.nodes.FlowNode.restart
>         > (FlowNode.java :239)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.FlowNode.start(FlowNode.java:280)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.nodes.FlowNode.controlEvent(FlowNode.java:392)
>         >         at
>         org.globus.cog.karajan.workflow.nodes.FlowNode.event
>         > (FlowNode.java:331)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.FlowElementWrapper.event(FlowElementWrapper.java:227)
>         >         at
>         >
>         org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)
>         >         at
>         org.globus.cog.karajan.workflow.events.EventBus.sendHooked
>         > (EventBus.java:97)
>         >         at
>         > org.globus.cog.karajan.workflow.events.EventWorker.run
>         (EventWorker.java:69)
>         >
>         > Many thanks,
>         > Jing
>         > _______________________________________________
>         > Swift-user mailing list
>         > Swift-user at ci.uchicago.edu
>         > http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
>         
>