[Swift-devel] swift not working

[Michael Andric]

/disks/ci-gpfs/fmri/cnari/config/sites_ucanl64.xml
and

/disks/ci-gpfs/fmri/cnari/config/sites_bsd.xml

On Tue, Apr 21, 2009 at 10:10 AM, Ben Clifford <benc at hawaga.org.uk> wrote:

>
> Please can you send the sites.xml files for the below two sites. They both
> look like network errors of some kind.
>
> On Tue, 21 Apr 2009, Michael Andric wrote:
>
> > Normally, I would hit up Sarah for a fix on this, but since she's on
> > vacation I'm hoping someone else out there could help with this.  I'm
> unable
> > to get swift jobs submitted.  I've tried submitting to both the ucanl64
> and
> > bsd clusters.  The run dir (with log files) is here:
> > /disks/ci-gpfs/fmri/cnari/swift/projects/andric/SNR/RFL2
> >
> >
> > Here's what I get from ucanl:
> >
> > [...]Progress:  Submitting:1  Submitted:1 Failed but can retry:1
> > Failed to transfer wrapper log from AFNIsnr-20090421-0930-q403bn99/info/e
> on
> > ANLUCTERAGRID64
> > Progress:  Submitting:1 Failed but can retry:2
> > Progress:  Submitting:1 Failed but can retry:2
> > Progress:  Submitting:1 Failed but can retry:2
> > Progress:  Stage in:1  Submitting:1 Failed but can retry:1
> > Progress:  Submitting:2 Failed but can retry:1
> > Progress:  Submitting:1  Submitted:1 Failed but can retry:1
> > Failed to transfer wrapper log from AFNIsnr-20090421-0930-q403bn99/info/g
> on
> > ANLUCTERAGRID64
> > Progress:  Submitting:1  Failed:1 Failed but can retry:1
> > Execution failed:
> >         Exception in AFNI_3dvolreg:
> > Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run6_trim, -base,
> > ts.6_trim+orig[92], -prefix, volreg.RFL2.run6_trim, ts.6_trim+orig.BRIK]
> > Host: ANLUCTERAGRID64
> > Directory: AFNIsnr-20090421-0930-q403bn99/jobs/g/AFNI_3dvolreg-gxefdp9j
> > stderr.txt:
> >
> > stdout.txt:
> >
> > ----
> >
> > Caused by:
> >         Cannot submit job: ; nested exception is:
> >         java.net.SocketTimeoutException: Read timed out
> > gwynn 5%
> >
> >
> >
> > and this is what I get on bsd:
> >
> > RunID: 20090421-0943-o1bb0081
> > Progress:
> > Progress:  Selecting site:1  Initializing site shared directory:1  Stage
> > in:1
> > Progress:  Stage in:2  Submitting:1
> > 2009.04.21 09:44:04.848 CDT: [ERROR] Parsing profiles on line 1800
> Illegal
> > character ':'at position 60 :Illegal character ':'
> > Progress:  Submitted:1 Failed but can retry:2
> > Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/f
> on
> > BSD
> > Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/g
> on
> > BSD
> > Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/e
> on
> > BSD
> > Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/i
> on
> > BSD
> > Progress: Failed but can retry:3
> > Progress:  Stage in:1 Failed but can retry:2
> > Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/m
> on
> > BSD
> > Progress: Failed but can retry:3
> > Progress: Failed but can retry:3
> > Progress: Failed but can retry:3
> > Progress:  Stage in:1 Failed but can retry:2
> > Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/o
> on
> > BSD
> > Progress: Failed but can retry:3
> > Progress: Failed but can retry:3
> > Progress: Failed but can retry:3
> > Progress: Failed but can retry:3
> > Progress:  Stage in:1 Failed but can retry:2
> > Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/q
> on
> > BSD
> > Progress:  Failed:1 Failed but can retry:2
> > Execution failed:
> >         Exception in AFNI_3dvolreg:
> > Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run5_trim, -base,
> > ts.5_trim+orig[92], -prefix, volreg.RFL2.run5_trim, ts.5_trim+orig.BRIK]
> > Host: BSD
> > Directory: AFNIsnr-20090421-0943-o1bb0081/jobs/q/AFNI_3dvolreg-q0rydp9j
> > stderr.txt:
> >
> > stdout.txt:
> >
> > ----
> >
> > Caused by:
> >         Cannot submit job
> > Caused by:
> >         Data transfer to the server failed [Caused by: Token length
> > 1248813600 > 33554432]
> >
>
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