/disks/ci-gpfs/fmri/cnari/config/sites_ucanl64.xml<div><br></div><div>and </div><div><br></div><div>/disks/ci-gpfs/fmri/cnari/config/sites_bsd.xml<br><br><div class="gmail_quote">On Tue, Apr 21, 2009 at 10:10 AM, Ben Clifford <span dir="ltr"><<a href="mailto:benc@hawaga.org.uk">benc@hawaga.org.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><br>
Please can you send the sites.xml files for the below two sites. They both<br>
look like network errors of some kind.<br>
<div><div></div><div class="h5"><br>
On Tue, 21 Apr 2009, Michael Andric wrote:<br>
<br>
> Normally, I would hit up Sarah for a fix on this, but since she's on<br>
> vacation I'm hoping someone else out there could help with this. I'm unable<br>
> to get swift jobs submitted. I've tried submitting to both the ucanl64 and<br>
> bsd clusters. The run dir (with log files) is here:<br>
> /disks/ci-gpfs/fmri/cnari/swift/projects/andric/SNR/RFL2<br>
><br>
><br>
> Here's what I get from ucanl:<br>
><br>
> [...]Progress: Submitting:1 Submitted:1 Failed but can retry:1<br>
> Failed to transfer wrapper log from AFNIsnr-20090421-0930-q403bn99/info/e on<br>
> ANLUCTERAGRID64<br>
> Progress: Submitting:1 Failed but can retry:2<br>
> Progress: Submitting:1 Failed but can retry:2<br>
> Progress: Submitting:1 Failed but can retry:2<br>
> Progress: Stage in:1 Submitting:1 Failed but can retry:1<br>
> Progress: Submitting:2 Failed but can retry:1<br>
> Progress: Submitting:1 Submitted:1 Failed but can retry:1<br>
> Failed to transfer wrapper log from AFNIsnr-20090421-0930-q403bn99/info/g on<br>
> ANLUCTERAGRID64<br>
> Progress: Submitting:1 Failed:1 Failed but can retry:1<br>
> Execution failed:<br>
> Exception in AFNI_3dvolreg:<br>
> Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run6_trim, -base,<br>
> ts.6_trim+orig[92], -prefix, volreg.RFL2.run6_trim, ts.6_trim+orig.BRIK]<br>
> Host: ANLUCTERAGRID64<br>
> Directory: AFNIsnr-20090421-0930-q403bn99/jobs/g/AFNI_3dvolreg-gxefdp9j<br>
> stderr.txt:<br>
><br>
> stdout.txt:<br>
><br>
> ----<br>
><br>
> Caused by:<br>
> Cannot submit job: ; nested exception is:<br>
> java.net.SocketTimeoutException: Read timed out<br>
> gwynn 5%<br>
><br>
><br>
><br>
> and this is what I get on bsd:<br>
><br>
> RunID: 20090421-0943-o1bb0081<br>
> Progress:<br>
> Progress: Selecting site:1 Initializing site shared directory:1 Stage<br>
> in:1<br>
> Progress: Stage in:2 Submitting:1<br>
> 2009.04.21 09:44:04.848 CDT: [ERROR] Parsing profiles on line 1800 Illegal<br>
> character ':'at position 60 :Illegal character ':'<br>
> Progress: Submitted:1 Failed but can retry:2<br>
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/f on<br>
> BSD<br>
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/g on<br>
> BSD<br>
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/e on<br>
> BSD<br>
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/i on<br>
> BSD<br>
> Progress: Failed but can retry:3<br>
> Progress: Stage in:1 Failed but can retry:2<br>
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/m on<br>
> BSD<br>
> Progress: Failed but can retry:3<br>
> Progress: Failed but can retry:3<br>
> Progress: Failed but can retry:3<br>
> Progress: Stage in:1 Failed but can retry:2<br>
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/o on<br>
> BSD<br>
> Progress: Failed but can retry:3<br>
> Progress: Failed but can retry:3<br>
> Progress: Failed but can retry:3<br>
> Progress: Failed but can retry:3<br>
> Progress: Stage in:1 Failed but can retry:2<br>
> Failed to transfer wrapper log from AFNIsnr-20090421-0943-o1bb0081/info/q on<br>
> BSD<br>
> Progress: Failed:1 Failed but can retry:2<br>
> Execution failed:<br>
> Exception in AFNI_3dvolreg:<br>
> Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run5_trim, -base,<br>
> ts.5_trim+orig[92], -prefix, volreg.RFL2.run5_trim, ts.5_trim+orig.BRIK]<br>
> Host: BSD<br>
> Directory: AFNIsnr-20090421-0943-o1bb0081/jobs/q/AFNI_3dvolreg-q0rydp9j<br>
> stderr.txt:<br>
><br>
> stdout.txt:<br>
><br>
> ----<br>
><br>
> Caused by:<br>
> Cannot submit job<br>
> Caused by:<br>
> Data transfer to the server failed [Caused by: Token length<br>
> 1248813600 > 33554432]<br>
><br>
</div></div></blockquote></div><br></div>