[Swift-devel] swift not working

[Mihael Hategan]

I don't see anything wrong with your setup.

Is this a persistent problem (i.e. can you try to run these again)?

On Tue, 2009-04-21 at 10:31 -0500, Michael Andric wrote:
> /disks/ci-gpfs/fmri/cnari/config/sites_ucanl64.xml
> 
> 
> and 
> 
> 
> /disks/ci-gpfs/fmri/cnari/config/sites_bsd.xml
> 
> On Tue, Apr 21, 2009 at 10:10 AM, Ben Clifford <benc at hawaga.org.uk>
> wrote:
>         
>         Please can you send the sites.xml files for the below two
>         sites. They both
>         look like network errors of some kind.
>         
>         
>         On Tue, 21 Apr 2009, Michael Andric wrote:
>         
>         > Normally, I would hit up Sarah for a fix on this, but since
>         she's on
>         > vacation I'm hoping someone else out there could help with
>         this.  I'm unable
>         > to get swift jobs submitted.  I've tried submitting to both
>         the ucanl64 and
>         > bsd clusters.  The run dir (with log files) is here:
>         > /disks/ci-gpfs/fmri/cnari/swift/projects/andric/SNR/RFL2
>         >
>         >
>         > Here's what I get from ucanl:
>         >
>         > [...]Progress:  Submitting:1  Submitted:1 Failed but can
>         retry:1
>         > Failed to transfer wrapper log from
>         AFNIsnr-20090421-0930-q403bn99/info/e on
>         > ANLUCTERAGRID64
>         > Progress:  Submitting:1 Failed but can retry:2
>         > Progress:  Submitting:1 Failed but can retry:2
>         > Progress:  Submitting:1 Failed but can retry:2
>         > Progress:  Stage in:1  Submitting:1 Failed but can retry:1
>         > Progress:  Submitting:2 Failed but can retry:1
>         > Progress:  Submitting:1  Submitted:1 Failed but can retry:1
>         > Failed to transfer wrapper log from
>         AFNIsnr-20090421-0930-q403bn99/info/g on
>         > ANLUCTERAGRID64
>         > Progress:  Submitting:1  Failed:1 Failed but can retry:1
>         > Execution failed:
>         >         Exception in AFNI_3dvolreg:
>         > Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run6_trim,
>         -base,
>         > ts.6_trim+orig[92], -prefix, volreg.RFL2.run6_trim,
>         ts.6_trim+orig.BRIK]
>         > Host: ANLUCTERAGRID64
>         > Directory:
>         AFNIsnr-20090421-0930-q403bn99/jobs/g/AFNI_3dvolreg-gxefdp9j
>         > stderr.txt:
>         >
>         > stdout.txt:
>         >
>         > ----
>         >
>         > Caused by:
>         >         Cannot submit job: ; nested exception is:
>         >         java.net.SocketTimeoutException: Read timed out
>         > gwynn 5%
>         >
>         >
>         >
>         > and this is what I get on bsd:
>         >
>         > RunID: 20090421-0943-o1bb0081
>         > Progress:
>         > Progress:  Selecting site:1  Initializing site shared
>         directory:1  Stage
>         > in:1
>         > Progress:  Stage in:2  Submitting:1
>         > 2009.04.21 09:44:04.848 CDT: [ERROR] Parsing profiles on
>         line 1800 Illegal
>         > character ':'at position 60 :Illegal character ':'
>         > Progress:  Submitted:1 Failed but can retry:2
>         > Failed to transfer wrapper log from
>         AFNIsnr-20090421-0943-o1bb0081/info/f on
>         > BSD
>         > Failed to transfer wrapper log from
>         AFNIsnr-20090421-0943-o1bb0081/info/g on
>         > BSD
>         > Failed to transfer wrapper log from
>         AFNIsnr-20090421-0943-o1bb0081/info/e on
>         > BSD
>         > Failed to transfer wrapper log from
>         AFNIsnr-20090421-0943-o1bb0081/info/i on
>         > BSD
>         > Progress: Failed but can retry:3
>         > Progress:  Stage in:1 Failed but can retry:2
>         > Failed to transfer wrapper log from
>         AFNIsnr-20090421-0943-o1bb0081/info/m on
>         > BSD
>         > Progress: Failed but can retry:3
>         > Progress: Failed but can retry:3
>         > Progress: Failed but can retry:3
>         > Progress:  Stage in:1 Failed but can retry:2
>         > Failed to transfer wrapper log from
>         AFNIsnr-20090421-0943-o1bb0081/info/o on
>         > BSD
>         > Progress: Failed but can retry:3
>         > Progress: Failed but can retry:3
>         > Progress: Failed but can retry:3
>         > Progress: Failed but can retry:3
>         > Progress:  Stage in:1 Failed but can retry:2
>         > Failed to transfer wrapper log from
>         AFNIsnr-20090421-0943-o1bb0081/info/q on
>         > BSD
>         > Progress:  Failed:1 Failed but can retry:2
>         > Execution failed:
>         >         Exception in AFNI_3dvolreg:
>         > Arguments: [-twopass, -twodup, -dfile, mot_RFL2.run5_trim,
>         -base,
>         > ts.5_trim+orig[92], -prefix, volreg.RFL2.run5_trim,
>         ts.5_trim+orig.BRIK]
>         > Host: BSD
>         > Directory:
>         AFNIsnr-20090421-0943-o1bb0081/jobs/q/AFNI_3dvolreg-q0rydp9j
>         > stderr.txt:
>         >
>         > stdout.txt:
>         >
>         > ----
>         >
>         > Caused by:
>         >         Cannot submit job
>         > Caused by:
>         >         Data transfer to the server failed [Caused by: Token
>         length
>         > 1248813600 > 33554432]
>         >
>         
> 
> 
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