[petsc-users] Error running make on MUMPS

[Fande Kong]

Thanks Matt,

I understand completely, the actual error should be

"
ln -s libHYPRE_parcsr_ls-2.20.0.so libHYPRE_parcsr_ls.so gmake[1]: Leaving
directory
`/beegfs1/home/anovak/cardinal/contrib/moose/petsc/arch-moose/externalpackages/git.hypre/src/parcsr_ls'
          Error running make; make install on HYPRE: Could not execute
"['/usr/bin/gmake install']":
"

The one you saw was that hypre automatically took the second try for
parcsr_ls after the first failed gmake install. Because the first try
already did  "ln -s libHYPRE_parcsr_ls-2.20.0.so libHYPRE_parcsr_ls.so",
and then second try would see that ‘libHYPRE_parcsr_ls.so" already existed.

Thanks,
Fande

On Thu, Nov 11, 2021 at 1:29 PM Matthew Knepley <knepley at gmail.com> wrote:

> On Thu, Nov 11, 2021 at 3:25 PM Fande Kong <fdkong.jd at gmail.com> wrote:
>
>> Thanks, Satish
>>
>> "--with-make-np=1"  did help us on MUMPS, but we had new trouble with
>> hypre now.
>>
>> It is hard to understand why "gmake install" even failed.
>>
>
> Because HYPRE thinks it is better to use 'ln' than the 'install' script
> that handles things like the target existing:
>
> gmake[1]: Leaving directory
> `/beegfs1/home/anovak/cardinal/contrib/moose/petsc/arch-moose/externalpackages/git.hypre/src/parcsr_ls'
> ln: failed to create symbolic link ‘libHYPRE_parcsr_ls.so’: File exists
> gmake[1]: *** [libHYPRE_parcsr_ls.so] Error 1
> gmake: *** [all] Error 1
>
> I think everything needs to be cleaned out for Hypre to reinstall.
>
>   Thanks,
>
>      Matt
>
>
>> Please see the attachment for the log file.
>>
>> Thanks,
>>
>> Fande
>>
>> On Wed, Nov 10, 2021 at 12:16 PM Satish Balay <balay at mcs.anl.gov> wrote:
>>
>>> You are using petsc-3.15.1 - and likely the mumps build change between
>>> then and current 3.16.
>>>
>>> Can you use latest PETSc release?
>>>
>>> If not - Suggest removing  --download-mumps=
>>> https://bitbucket.org/petsc/pkg-mumps.git
>>> --download-mumps-commit=v5.4.1-p1 options [and PETSC_ARCH] and going back
>>> to your old
>>> build.
>>>
>>> If it fails [as before] - retry with: --with-make-np=1
>>>
>>> Satish
>>>
>>> On Wed, 10 Nov 2021, Novak, April via petsc-users wrote:
>>>
>>> > Hi Barry,
>>> >
>>> > Thank you for your assistance - I’ve attached the latest
>>> configure.log. I still encounter issues building, though some of the MUMPS
>>> errors do seem to have been fixed with the --download-mumps-commit option.
>>> Do you have a recommendation for addressing these other errors?
>>> >
>>> > Thanks,
>>> >
>>> > -April
>>> >
>>> > From: Fande Kong <fdkong.jd at gmail.com>
>>> > Date: Wednesday, November 10, 2021 at 9:44 AM
>>> > To: Barry Smith <bsmith at petsc.dev>
>>> > Cc: PETSc users list <petsc-users at mcs.anl.gov>, Novak, April <
>>> anovak at anl.gov>
>>> > Subject: Re: [petsc-users] Error running make on MUMPS
>>> > Thanks, Barry,
>>> >
>>> > We will try this, and report back
>>> >
>>> >
>>> > Fande
>>> >
>>> > On Tue, Nov 9, 2021 at 5:41 PM Barry Smith <bsmith at petsc.dev<mailto:
>>> bsmith at petsc.dev>> wrote:
>>> >
>>> >    This version of MUMPS has a bug in its build system; it does not
>>> have all the dependencies on Fortran modules properly listed so Fortran
>>> files can get compiled too early causing "random" failures during some
>>> builds, especially on machines with lots of cores for compiling.
>>> >
>>> >    I think you should be able to use --download-mumps=
>>> https://bitbucket.org/petsc/pkg-mumps.git
>>> --download-mumps-commit=v5.4.1-p1 to get a patched version.
>>> >
>>> > Barry
>>> >
>>> >
>>> >
>>> > On Nov 9, 2021, at 6:10 PM, Fande Kong <fdkong.jd at gmail.com<mailto:
>>> fdkong.jd at gmail.com>> wrote:
>>> >
>>> > Hi All,
>>> >
>>> > We encountered a configuration error when running the PETSc
>>> configuration on a HPC system.  Went through the log file, but could not
>>> find much. The log file was attached.
>>> >
>>> > Any thoughts?
>>> >
>>> > Thanks for your help, as always.
>>> >
>>> > Fande
>>> >
>>> >
>>> >
>>> >
>>> >
>>> >
>>> > <configure.log>
>>> >
>>> >
>>>
>>
>
> --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
> https://www.cse.buffalo.edu/~knepley/
> <http://www.cse.buffalo.edu/~knepley/>
>
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