[petsc-users] Error running make on MUMPS

[Matthew Knepley]

On Thu, Nov 11, 2021 at 3:25 PM Fande Kong <fdkong.jd at gmail.com> wrote:

> Thanks, Satish
>
> "--with-make-np=1"  did help us on MUMPS, but we had new trouble with
> hypre now.
>
> It is hard to understand why "gmake install" even failed.
>

Because HYPRE thinks it is better to use 'ln' than the 'install' script
that handles things like the target existing:

gmake[1]: Leaving directory
`/beegfs1/home/anovak/cardinal/contrib/moose/petsc/arch-moose/externalpackages/git.hypre/src/parcsr_ls'
ln: failed to create symbolic link ‘libHYPRE_parcsr_ls.so’: File exists
gmake[1]: *** [libHYPRE_parcsr_ls.so] Error 1
gmake: *** [all] Error 1

I think everything needs to be cleaned out for Hypre to reinstall.

  Thanks,

     Matt


> Please see the attachment for the log file.
>
> Thanks,
>
> Fande
>
> On Wed, Nov 10, 2021 at 12:16 PM Satish Balay <balay at mcs.anl.gov> wrote:
>
>> You are using petsc-3.15.1 - and likely the mumps build change between
>> then and current 3.16.
>>
>> Can you use latest PETSc release?
>>
>> If not - Suggest removing  --download-mumps=
>> https://bitbucket.org/petsc/pkg-mumps.git
>> --download-mumps-commit=v5.4.1-p1 options [and PETSC_ARCH] and going back
>> to your old
>> build.
>>
>> If it fails [as before] - retry with: --with-make-np=1
>>
>> Satish
>>
>> On Wed, 10 Nov 2021, Novak, April via petsc-users wrote:
>>
>> > Hi Barry,
>> >
>> > Thank you for your assistance - I’ve attached the latest configure.log.
>> I still encounter issues building, though some of the MUMPS errors do seem
>> to have been fixed with the --download-mumps-commit option. Do you have a
>> recommendation for addressing these other errors?
>> >
>> > Thanks,
>> >
>> > -April
>> >
>> > From: Fande Kong <fdkong.jd at gmail.com>
>> > Date: Wednesday, November 10, 2021 at 9:44 AM
>> > To: Barry Smith <bsmith at petsc.dev>
>> > Cc: PETSc users list <petsc-users at mcs.anl.gov>, Novak, April <
>> anovak at anl.gov>
>> > Subject: Re: [petsc-users] Error running make on MUMPS
>> > Thanks, Barry,
>> >
>> > We will try this, and report back
>> >
>> >
>> > Fande
>> >
>> > On Tue, Nov 9, 2021 at 5:41 PM Barry Smith <bsmith at petsc.dev<mailto:
>> bsmith at petsc.dev>> wrote:
>> >
>> >    This version of MUMPS has a bug in its build system; it does not
>> have all the dependencies on Fortran modules properly listed so Fortran
>> files can get compiled too early causing "random" failures during some
>> builds, especially on machines with lots of cores for compiling.
>> >
>> >    I think you should be able to use --download-mumps=
>> https://bitbucket.org/petsc/pkg-mumps.git
>> --download-mumps-commit=v5.4.1-p1 to get a patched version.
>> >
>> > Barry
>> >
>> >
>> >
>> > On Nov 9, 2021, at 6:10 PM, Fande Kong <fdkong.jd at gmail.com<mailto:
>> fdkong.jd at gmail.com>> wrote:
>> >
>> > Hi All,
>> >
>> > We encountered a configuration error when running the PETSc
>> configuration on a HPC system.  Went through the log file, but could not
>> find much. The log file was attached.
>> >
>> > Any thoughts?
>> >
>> > Thanks for your help, as always.
>> >
>> > Fande
>> >
>> >
>> >
>> >
>> >
>> >
>> > <configure.log>
>> >
>> >
>>
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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