[petsc-users] Error running make on MUMPS

[Matthew Knepley]

On Thu, Nov 11, 2021 at 3:44 PM Fande Kong <fdkong.jd at gmail.com> wrote:

> Thanks Matt,
>
> I understand completely, the actual error should be
>
> "
> ln -s libHYPRE_parcsr_ls-2.20.0.so libHYPRE_parcsr_ls.so gmake[1]:
> Leaving directory
> `/beegfs1/home/anovak/cardinal/contrib/moose/petsc/arch-moose/externalpackages/git.hypre/src/parcsr_ls'
>           Error running make; make install on HYPRE: Could not execute
> "['/usr/bin/gmake install']":
> "
>
> The one you saw was that hypre automatically took the second try for
> parcsr_ls after the first failed gmake install. Because the first try
> already did  "ln -s libHYPRE_parcsr_ls-2.20.0.so libHYPRE_parcsr_ls.so",
> and then second try would see that ‘libHYPRE_parcsr_ls.so" already existed.
>

Are you completely sure? This just looks like a cascading make error,
namely that one shell thing failed (ln) and then the make reports an error.

  Thanks,

     Matt


> Thanks,
> Fande
>
> On Thu, Nov 11, 2021 at 1:29 PM Matthew Knepley <knepley at gmail.com> wrote:
>
>> On Thu, Nov 11, 2021 at 3:25 PM Fande Kong <fdkong.jd at gmail.com> wrote:
>>
>>> Thanks, Satish
>>>
>>> "--with-make-np=1"  did help us on MUMPS, but we had new trouble with
>>> hypre now.
>>>
>>> It is hard to understand why "gmake install" even failed.
>>>
>>
>> Because HYPRE thinks it is better to use 'ln' than the 'install' script
>> that handles things like the target existing:
>>
>> gmake[1]: Leaving directory
>> `/beegfs1/home/anovak/cardinal/contrib/moose/petsc/arch-moose/externalpackages/git.hypre/src/parcsr_ls'
>> ln: failed to create symbolic link ‘libHYPRE_parcsr_ls.so’: File exists
>> gmake[1]: *** [libHYPRE_parcsr_ls.so] Error 1
>> gmake: *** [all] Error 1
>>
>> I think everything needs to be cleaned out for Hypre to reinstall.
>>
>>   Thanks,
>>
>>      Matt
>>
>>
>>> Please see the attachment for the log file.
>>>
>>> Thanks,
>>>
>>> Fande
>>>
>>> On Wed, Nov 10, 2021 at 12:16 PM Satish Balay <balay at mcs.anl.gov> wrote:
>>>
>>>> You are using petsc-3.15.1 - and likely the mumps build change between
>>>> then and current 3.16.
>>>>
>>>> Can you use latest PETSc release?
>>>>
>>>> If not - Suggest removing  --download-mumps=
>>>> https://bitbucket.org/petsc/pkg-mumps.git
>>>> --download-mumps-commit=v5.4.1-p1 options [and PETSC_ARCH] and going back
>>>> to your old
>>>> build.
>>>>
>>>> If it fails [as before] - retry with: --with-make-np=1
>>>>
>>>> Satish
>>>>
>>>> On Wed, 10 Nov 2021, Novak, April via petsc-users wrote:
>>>>
>>>> > Hi Barry,
>>>> >
>>>> > Thank you for your assistance - I’ve attached the latest
>>>> configure.log. I still encounter issues building, though some of the MUMPS
>>>> errors do seem to have been fixed with the --download-mumps-commit option.
>>>> Do you have a recommendation for addressing these other errors?
>>>> >
>>>> > Thanks,
>>>> >
>>>> > -April
>>>> >
>>>> > From: Fande Kong <fdkong.jd at gmail.com>
>>>> > Date: Wednesday, November 10, 2021 at 9:44 AM
>>>> > To: Barry Smith <bsmith at petsc.dev>
>>>> > Cc: PETSc users list <petsc-users at mcs.anl.gov>, Novak, April <
>>>> anovak at anl.gov>
>>>> > Subject: Re: [petsc-users] Error running make on MUMPS
>>>> > Thanks, Barry,
>>>> >
>>>> > We will try this, and report back
>>>> >
>>>> >
>>>> > Fande
>>>> >
>>>> > On Tue, Nov 9, 2021 at 5:41 PM Barry Smith <bsmith at petsc.dev<mailto:
>>>> bsmith at petsc.dev>> wrote:
>>>> >
>>>> >    This version of MUMPS has a bug in its build system; it does not
>>>> have all the dependencies on Fortran modules properly listed so Fortran
>>>> files can get compiled too early causing "random" failures during some
>>>> builds, especially on machines with lots of cores for compiling.
>>>> >
>>>> >    I think you should be able to use --download-mumps=
>>>> https://bitbucket.org/petsc/pkg-mumps.git
>>>> --download-mumps-commit=v5.4.1-p1 to get a patched version.
>>>> >
>>>> > Barry
>>>> >
>>>> >
>>>> >
>>>> > On Nov 9, 2021, at 6:10 PM, Fande Kong <fdkong.jd at gmail.com<mailto:
>>>> fdkong.jd at gmail.com>> wrote:
>>>> >
>>>> > Hi All,
>>>> >
>>>> > We encountered a configuration error when running the PETSc
>>>> configuration on a HPC system.  Went through the log file, but could not
>>>> find much. The log file was attached.
>>>> >
>>>> > Any thoughts?
>>>> >
>>>> > Thanks for your help, as always.
>>>> >
>>>> > Fande
>>>> >
>>>> >
>>>> >
>>>> >
>>>> >
>>>> >
>>>> > <configure.log>
>>>> >
>>>> >
>>>>
>>>
>>
>> --
>> What most experimenters take for granted before they begin their
>> experiments is infinitely more interesting than any results to which their
>> experiments lead.
>> -- Norbert Wiener
>>
>> https://www.cse.buffalo.edu/~knepley/
>> <http://www.cse.buffalo.edu/~knepley/>
>>
>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
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