[petsc-users] configuration error

Manav Bhatia bhatiamanav at gmail.com
Tue Oct 31 16:27:30 CDT 2017


Thanks, Barry. 

Does this also address the mumps compilation issue that I had shared in the same thread: 

mumps_c.c:307:53: error: no member named 'nnz' in 'CMUMPS_STRUC_C'; did you mean 'nz'?
        mumps_par->n=0; mumps_par->nz=0; mumps_par->nnz=0; mumps_par->nz_loc=0; mumps_par->nnz_loc=0; mumps_par->nelt=0;mumps_par->instance_number=0;mumps_par->deficiency=0;mumps_par->lwk_user=0;mumps_par->size_schur=0;mumps_par->lrhs=0; mumps_par->lredrhs=0; mumps_par->nrhs=0; mumps_par->nz_rhs=0; mumps_par->lsol_loc=0;
                                                    ^~~
                                                    nz
/Users/manav/Documents/codes/numerical_lib/petsc/include/cmumps_c.h:56:20: note: 'nz' declared here
    MUMPS_INT      nz;
                   ^
mumps_c.c:307:92: error: no member named 'nnz_loc' in 'CMUMPS_STRUC_C'; did you mean 'nz_loc'?
        mumps_par->n=0; mumps_par->nz=0; mumps_par->nnz=0; mumps_par->nz_loc=0; mumps_par->nnz_loc=0; mumps_par->nelt=0;mumps_par->instance_number=0;mumps_par->deficiency=0;mumps_par->lwk_user=0;mumps_par->size_schur=0;mumps_par->lrhs=0; mumps_par->lredrhs=0; mumps_par->nrhs=0; mumps_par->nz_rhs=0; mumps_par->lsol_loc=0;
                                                                                           ^~~~~~~
                                                                                           nz_loc
/Users/manav/Documents/codes/numerical_lib/petsc/include/cmumps_c.h:62:20: note: 'nz_loc' declared here
    MUMPS_INT      nz_loc;
                   ^
mumps_c.c:419:42: error: no member named 'nnz' in 'CMUMPS_STRUC_C'; did you mean 'nz'?
          &(mumps_par->nz), &(mumps_par->nnz), irn, &irn_avail, jcn, &jcn_avail, a, &a_avail,
                                         ^~~
                                         nz
/Users/manav/Documents/codes/numerical_lib/petsc/include/cmumps_c.h:56:20: note: 'nz' declared here
    MUMPS_INT      nz;
                   ^
mumps_c.c:420:46: error: no member named 'nnz_loc' in 'CMUMPS_STRUC_C'; did you mean 'nz_loc'?
          &(mumps_par->nz_loc), &(mumps_par->nnz_loc), irn_loc, &irn_loc_avail, jcn_loc, &jcn_loc_avail,
                                             ^~~~~~~
                                             nz_loc
/Users/manav/Documents/codes/numerical_lib/petsc/include/cmumps_c.h:62:20: note: 'nz_loc' declared here
    MUMPS_INT      nz_loc;
                   ^
mumps_c.c:419:29: warning: incompatible pointer types passing 'int *' to parameter of type 'int64_t *' (aka 'long long *') [-Wincompatible-pointer-types]
          &(mumps_par->nz), &(mumps_par->nnz), irn, &irn_avail, jcn, &jcn_avail, a, &a_avail,
                            ^~~~~~~~~~~~~~~~~
mumps_c.c:99:28: note: passing argument to parameter 'nnz' here
           MUMPS_INT8     *nnz,
                           ^
mumps_c.c:420:33: warning: incompatible pointer types passing 'int *' to parameter of type 'int64_t *' (aka 'long long *') [-Wincompatible-pointer-types]
          &(mumps_par->nz_loc), &(mumps_par->nnz_loc), irn_loc, &irn_loc_avail, jcn_loc, &jcn_loc_avail,
                                ^~~~~~~~~~~~~~~~~~~~~
mumps_c.c:107:28: note: passing argument to parameter 'nnz_loc' here
           MUMPS_INT8     *nnz_loc,
                           ^
2 warnings and 4 errors generated.


> On Oct 31, 2017, at 4:25 PM, Smith, Barry F. <bsmith at mcs.anl.gov> wrote:
> 
> 
>  Manav,
> 
>    Thanks for reporting the problem 
> 
>  Fande,
> 
>    Thanks for the pointer.
> 
>    Satish determined the correct long term fix and it is in the branch barry/fix-lto_library-option-maint and will be put in the maint branch and master branch if it passes the testing tonight.
> 
>   Barry
> 
> 
>> On Oct 30, 2017, at 11:36 AM, Kong, Fande <fande.kong at inl.gov> wrote:
>> 
>> We had exactly the same issue when upgraded compilers.  I guess this is somehow related to gfortran.  A simple way to work around for us is to change if with_rpath: to  if False at line 54 of config/BuildSystem/config/libraries.py. 
>> 
>> Not sure if it works for you.
>> 
>> Fande,
>> 
>> 
>> 
>> 
>> On Mon, Oct 30, 2017 at 10:14 AM, Manav Bhatia <bhatiamanav at gmail.com> wrote:
>> Hi, 
>> 
>>  I am trying to install pets 3.8 on a new MacBook machine with OS 10.13. I have installed openmpi from macports and I am getting this error on configuration. Attached is also the configure.log file. 
>> 
>>  I am not sure how to proceed with this. Any advice will be greatly appreciated!
>> 
>> Regards,
>> Manav
>> 
>> ===============================================================================
>>             Configuring PETSc to compile on your system                       
>> ===============================================================================
>> ===============================================================================                                                                                                                                                            ***** WARNING: Using default optimization C flags -g -O3                                                                                                                                                                             You might consider manually setting optimal optimization flags for your system with                                                                                                                                                   COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples                                                                                                                                                 ===============================================================================                                                                                                                                                      ===============================================================================                                                                                                                                                            ***** WARNING: Using default C++ optimization flags -g -O3                                                                                                                                                                           You might consider manually setting optimal optimization flags for your system with                                                                                                                                                   CXXOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples                                                                                                                                               ===============================================================================                                                                                                                                                      ===============================================================================                                                                                                                                                            ***** WARNING: Using default FORTRAN optimization flags -g -O                                                                                                                                                                        You might consider manually setting optimal optimization flags for your system with                                                                                                                                                   FOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples                                                                                                                                                 ===============================================================================                                                                                                                                                      ===============================================================================                                                                                                                                                                      WARNING! Compiling PETSc with no debugging, this should                                                                                                                                                                                    only be done for timing and production runs. All development should                                                                                                                                                                  be done when configured using --with-debugging=1                                                                                                                                                               ===============================================================================                                                                                                                                                      TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:171)                                                                                                                                           *******************************************************************************
>>         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
>> -------------------------------------------------------------------------------
>> C libraries cannot directly be used from Fortran
>> *******************************************************************************
>> 
>> 
>> 
>> 
>> 
>> 
> 

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