[petsc-users] Question about the error message

[Matthew Knepley]

On Mon, Jun 29, 2015 at 10:12 AM, Michael Povolotskyi <mpovolot at purdue.edu>
wrote:

>  Thank you, I can try with a newer release.
> Have you re-implemented the function there?
> The problem is we have not move to the new API completely.
> Is there any workaround with Petsc 3.4?
>

I think there was a bugfix here, but I would have to confirm in the logs.
If it works, we could try and backport
the solution since the interface did not change.

  Thanks,

     Matt


> On 06/29/2015 11:08 AM, Matthew Knepley wrote:
>
>  On Mon, Jun 29, 2015 at 9:59 AM, Michael Povolotskyi <mpovolot at purdue.edu
> > wrote:
>
>> Dear PETSc developers and users,
>> what does this error message mean?
>>
>> [0]PETSC ERROR: --------------------- Error Message
>> ------------------------------------
>> [0]PETSC ERROR: Argument out of range!
>> [0]PETSC ERROR: nnz cannot be greater than row length: local row 0 value
>> 108 rowlength 72!
>>
>
>  It looks like a bug in our AXPY implementation. We try to do
> preallocation of the result, but it seems
> here that we are overallocating. Can you run with the latest release?
>
>    Thanks,
>
>       Matt
>
>
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013
>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> [0]PETSC ERROR: See docs/index.html for manual pages.
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: /home/mpovolot/NEMO5/prototype/nemo on a linux-static
>> named conte-fe02.rcac.purdue.edu by mpovolot Mon Jun 29 10:49:32 2015
>> [0]PETSC ERROR: Libraries linked from
>> /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/linux-static/lib
>> [0]PETSC ERROR: Configure run at Sun Jan 19 12:47:22 2014
>> [0]PETSC ERROR: Configure options --with-cc=mpiicc --with-cxx=mpiicpc
>> --with-fc=mpiifort --download-sowing --with-scalar-type=complex
>> --with-shared-libraries=0 --with-pic=1 --with-clanguage=C++
>> --with-fortran=1 --with-fortran-kernels=0 --with-debugging=0
>> --with-blas-lapack-dir=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
>> --with-blacs-lib=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
>> --with-blacs-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
>> --with-scalapack-lib="-L/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
>> -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64"
>> --with-scalapack-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
>> --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3 --download-hdf5=yes
>> --download-metis=yes --download-parmetis=yes --download-superlu_dist=yes
>> --download-mumps=yes --download-hypre=no --download-spooles=yes
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: MatSeqAIJSetPreallocation_SeqAIJ() line 3524 in
>> /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
>> [0]PETSC ERROR: MatSeqAIJSetPreallocation() line 3496 in
>> /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
>> [0]PETSC ERROR: MatAXPY_SeqAIJ() line 2710 in
>> /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
>> [0]PETSC ERROR: MatAXPY() line 39 in
>> /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/utils/axpy.c
>> terminate called after throwing an instance of 'n5_runtime_error'
>>   what():  [PetscMatrixNemo<cplx>] PETSc gave error with code 63:
>>     Argument out of range
>>      .
>>
>> Program received signal SIGABRT, Aborted.
>>
>> Thank you,
>> Michael.
>>
>>
>
>
>  --
> What most experimenters take for granted before they begin their
> experiments is infinitely more interesting than any results to which their
> experiments lead.
> -- Norbert Wiener
>
>
> --
> Michael Povolotskyi, PhD
> Research Assistant Professor
> Network for Computational Nanotechnology
> Hall for Discover and Learning Research, Room 441
> West Lafayette, IN 47907
> Phone (765) 4949396
>
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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