[petsc-users] Question about the error message

[Michael Povolotskyi]

Thank you, I can try with a newer release.
Have you re-implemented the function there?
The problem is we have not move to the new API completely.
Is there any workaround with Petsc 3.4?

On 06/29/2015 11:08 AM, Matthew Knepley wrote:
> On Mon, Jun 29, 2015 at 9:59 AM, Michael Povolotskyi 
> <mpovolot at purdue.edu <mailto:mpovolot at purdue.edu>> wrote:
>
>     Dear PETSc developers and users,
>     what does this error message mean?
>
>     [0]PETSC ERROR: --------------------- Error Message
>     ------------------------------------
>     [0]PETSC ERROR: Argument out of range!
>     [0]PETSC ERROR: nnz cannot be greater than row length: local row 0
>     value 108 rowlength 72!
>
>
> It looks like a bug in our AXPY implementation. We try to do 
> preallocation of the result, but it seems
> here that we are overallocating. Can you run with the latest release?
>
>   Thanks,
>
>      Matt
>
>     [0]PETSC ERROR:
>     ------------------------------------------------------------------------
>     [0]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013
>     [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>     [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>     [0]PETSC ERROR: See docs/index.html for manual pages.
>     [0]PETSC ERROR:
>     ------------------------------------------------------------------------
>     [0]PETSC ERROR: /home/mpovolot/NEMO5/prototype/nemo on a
>     linux-static named conte-fe02.rcac.purdue.edu
>     <http://conte-fe02.rcac.purdue.edu> by mpovolot Mon Jun 29
>     10:49:32 2015
>     [0]PETSC ERROR: Libraries linked from
>     /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/linux-static/lib
>     [0]PETSC ERROR: Configure run at Sun Jan 19 12:47:22 2014
>     [0]PETSC ERROR: Configure options --with-cc=mpiicc
>     --with-cxx=mpiicpc --with-fc=mpiifort --download-sowing
>     --with-scalar-type=complex --with-shared-libraries=0 --with-pic=1
>     --with-clanguage=C++ --with-fortran=1 --with-fortran-kernels=0
>     --with-debugging=0
>     --with-blas-lapack-dir=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
>     --with-blacs-lib=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
>     --with-blacs-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
>     --with-scalapack-lib="-L/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
>     -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64"
>     --with-scalapack-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
>     --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3
>     --download-hdf5=yes --download-metis=yes --download-parmetis=yes
>     --download-superlu_dist=yes --download-mumps=yes
>     --download-hypre=no --download-spooles=yes
>     [0]PETSC ERROR:
>     ------------------------------------------------------------------------
>     [0]PETSC ERROR: MatSeqAIJSetPreallocation_SeqAIJ() line 3524 in
>     /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
>     [0]PETSC ERROR: MatSeqAIJSetPreallocation() line 3496 in
>     /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
>     [0]PETSC ERROR: MatAXPY_SeqAIJ() line 2710 in
>     /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
>     [0]PETSC ERROR: MatAXPY() line 39 in
>     /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/utils/axpy.c
>     terminate called after throwing an instance of 'n5_runtime_error'
>       what():  [PetscMatrixNemo<cplx>] PETSc gave error with code 63:
>         Argument out of range
>          .
>
>     Program received signal SIGABRT, Aborted.
>
>     Thank you,
>     Michael.
>
>
>
>
> -- 
> What most experimenters take for granted before they begin their 
> experiments is infinitely more interesting than any results to which 
> their experiments lead.
> -- Norbert Wiener

-- 
Michael Povolotskyi, PhD
Research Assistant Professor
Network for Computational Nanotechnology
Hall for Discover and Learning Research, Room 441
West Lafayette, IN 47907
Phone (765) 4949396

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