<div dir="ltr"><div class="gmail_extra"><div class="gmail_quote">On Mon, Jun 29, 2015 at 10:12 AM, Michael Povolotskyi <span dir="ltr"><<a href="mailto:mpovolot@purdue.edu" target="_blank">mpovolot@purdue.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
Thank you, I can try with a newer release.<br>
Have you re-implemented the function there?<br>
The problem is we have not move to the new API completely.<br>
Is there any workaround with Petsc 3.4?<br></div></blockquote><div><br></div><div>I think there was a bugfix here, but I would have to confirm in the logs. If it works, we could try and backport</div><div>the solution since the interface did not change.</div><div><br></div><div> Thanks,</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div bgcolor="#FFFFFF" text="#000000">
<div>On 06/29/2015 11:08 AM, Matthew Knepley
wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">
<div class="gmail_extra">
<div class="gmail_quote">On Mon, Jun 29, 2015 at 9:59 AM,
Michael Povolotskyi <span dir="ltr"><<a href="mailto:mpovolot@purdue.edu" target="_blank">mpovolot@purdue.edu</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear
PETSc developers and users,<br>
what does this error message mean?<br>
<br>
[0]PETSC ERROR: --------------------- Error Message
------------------------------------<br>
[0]PETSC ERROR: Argument out of range!<br>
[0]PETSC ERROR: nnz cannot be greater than row length:
local row 0 value 108 rowlength 72!<br>
</blockquote>
<div><br>
</div>
<div>It looks like a bug in our AXPY implementation. We try
to do preallocation of the result, but it seems</div>
<div>here that we are overallocating. Can you run with the
latest release?</div>
<div><br>
</div>
<div> Thanks,</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
[0]PETSC ERROR:
------------------------------------------------------------------------<br>
[0]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013<br>
[0]PETSC ERROR: See docs/changes/index.html for recent
updates.<br>
[0]PETSC ERROR: See docs/faq.html for hints about trouble
shooting.<br>
[0]PETSC ERROR: See docs/index.html for manual pages.<br>
[0]PETSC ERROR:
------------------------------------------------------------------------<br>
[0]PETSC ERROR: /home/mpovolot/NEMO5/prototype/nemo on a
linux-static named <a href="http://conte-fe02.rcac.purdue.edu" rel="noreferrer" target="_blank">conte-fe02.rcac.purdue.edu</a>
by mpovolot Mon Jun 29 10:49:32 2015<br>
[0]PETSC ERROR: Libraries linked from
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/linux-static/lib<br>
[0]PETSC ERROR: Configure run at Sun Jan 19 12:47:22 2014<br>
[0]PETSC ERROR: Configure options --with-cc=mpiicc
--with-cxx=mpiicpc --with-fc=mpiifort --download-sowing
--with-scalar-type=complex --with-shared-libraries=0
--with-pic=1 --with-clanguage=C++ --with-fortran=1
--with-fortran-kernels=0 --with-debugging=0
--with-blas-lapack-dir=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
--with-blacs-lib=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
--with-blacs-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
--with-scalapack-lib="-L/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
-lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64"
--with-scalapack-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
--COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3
--download-hdf5=yes --download-metis=yes
--download-parmetis=yes --download-superlu_dist=yes
--download-mumps=yes --download-hypre=no
--download-spooles=yes<br>
[0]PETSC ERROR:
------------------------------------------------------------------------<br>
[0]PETSC ERROR: MatSeqAIJSetPreallocation_SeqAIJ() line
3524 in
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c<br>
[0]PETSC ERROR: MatSeqAIJSetPreallocation() line 3496 in
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c<br>
[0]PETSC ERROR: MatAXPY_SeqAIJ() line 2710 in
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c<br>
[0]PETSC ERROR: MatAXPY() line 39 in
/apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/utils/axpy.c<br>
terminate called after throwing an instance of
'n5_runtime_error'<br>
what(): [PetscMatrixNemo<cplx>] PETSc gave error
with code 63:<br>
Argument out of range<br>
.<br>
<br>
Program received signal SIGABRT, Aborted.<br>
<br>
Thank you,<br>
Michael.<br>
<br>
</blockquote>
</div>
<br>
<br clear="all"><span class="HOEnZb"><font color="#888888">
<div><br>
</div>
-- <br>
<div>What most experimenters take for
granted before they begin their experiments is infinitely
more interesting than any results to which their experiments
lead.<br>
-- Norbert Wiener</div>
</font></span></div><span class="HOEnZb"><font color="#888888">
</font></span></div><span class="HOEnZb"><font color="#888888">
</font></span></blockquote><span class="HOEnZb"><font color="#888888">
<br>
<pre cols="72">--
Michael Povolotskyi, PhD
Research Assistant Professor
Network for Computational Nanotechnology
Hall for Discover and Learning Research, Room 441
West Lafayette, IN 47907
Phone <a href="tel:%28765%29%204949396" value="+17654949396" target="_blank">(765) 4949396</a>
</pre>
</font></span></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div>
</div></div>