[petsc-users] Question about the error message

[Michael Povolotskyi]

This would be great.
Thank you,
Michael.

On 06/29/2015 11:13 AM, Matthew Knepley wrote:
> On Mon, Jun 29, 2015 at 10:12 AM, Michael Povolotskyi 
> <mpovolot at purdue.edu <mailto:mpovolot at purdue.edu>> wrote:
>
>     Thank you, I can try with a newer release.
>     Have you re-implemented the function there?
>     The problem is we have not move to the new API completely.
>     Is there any workaround with Petsc 3.4?
>
>
> I think there was a bugfix here, but I would have to confirm in the 
> logs. If it works, we could try and backport
> the solution since the interface did not change.
>
>   Thanks,
>
>      Matt
>
>     On 06/29/2015 11:08 AM, Matthew Knepley wrote:
>>     On Mon, Jun 29, 2015 at 9:59 AM, Michael Povolotskyi
>>     <mpovolot at purdue.edu <mailto:mpovolot at purdue.edu>> wrote:
>>
>>         Dear PETSc developers and users,
>>         what does this error message mean?
>>
>>         [0]PETSC ERROR: --------------------- Error Message
>>         ------------------------------------
>>         [0]PETSC ERROR: Argument out of range!
>>         [0]PETSC ERROR: nnz cannot be greater than row length: local
>>         row 0 value 108 rowlength 72!
>>
>>
>>     It looks like a bug in our AXPY implementation. We try to do
>>     preallocation of the result, but it seems
>>     here that we are overallocating. Can you run with the latest release?
>>
>>       Thanks,
>>
>>          Matt
>>
>>         [0]PETSC ERROR:
>>         ------------------------------------------------------------------------
>>         [0]PETSC ERROR: Petsc Release Version 3.4.3, Oct, 15, 2013
>>         [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>>         [0]PETSC ERROR: See docs/faq.html for hints about trouble
>>         shooting.
>>         [0]PETSC ERROR: See docs/index.html for manual pages.
>>         [0]PETSC ERROR:
>>         ------------------------------------------------------------------------
>>         [0]PETSC ERROR: /home/mpovolot/NEMO5/prototype/nemo on a
>>         linux-static named conte-fe02.rcac.purdue.edu
>>         <http://conte-fe02.rcac.purdue.edu> by mpovolot Mon Jun 29
>>         10:49:32 2015
>>         [0]PETSC ERROR: Libraries linked from
>>         /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/linux-static/lib
>>         [0]PETSC ERROR: Configure run at Sun Jan 19 12:47:22 2014
>>         [0]PETSC ERROR: Configure options --with-cc=mpiicc
>>         --with-cxx=mpiicpc --with-fc=mpiifort --download-sowing
>>         --with-scalar-type=complex --with-shared-libraries=0
>>         --with-pic=1 --with-clanguage=C++ --with-fortran=1
>>         --with-fortran-kernels=0 --with-debugging=0
>>         --with-blas-lapack-dir=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
>>         --with-blacs-lib=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so
>>         --with-blacs-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
>>         --with-scalapack-lib="-L/apps/rhel6/intel/composer_xe_2013.3.163/mkl/lib/intel64
>>         -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64"
>>         --with-scalapack-include=/apps/rhel6/intel/composer_xe_2013.3.163/mkl/include
>>         --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3
>>         --download-hdf5=yes --download-metis=yes
>>         --download-parmetis=yes --download-superlu_dist=yes
>>         --download-mumps=yes --download-hypre=no --download-spooles=yes
>>         [0]PETSC ERROR:
>>         ------------------------------------------------------------------------
>>         [0]PETSC ERROR: MatSeqAIJSetPreallocation_SeqAIJ() line 3524
>>         in
>>         /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
>>         [0]PETSC ERROR: MatSeqAIJSetPreallocation() line 3496 in
>>         /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
>>         [0]PETSC ERROR: MatAXPY_SeqAIJ() line 2710 in
>>         /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/impls/aij/seq/aij.c
>>         [0]PETSC ERROR: MatAXPY() line 39 in
>>         /apps/rhel6/petsc/3.4.3_impi-4.1.1.036_intel-13.1.1.163/src/mat/utils/axpy.c
>>         terminate called after throwing an instance of 'n5_runtime_error'
>>           what():  [PetscMatrixNemo<cplx>] PETSc gave error with code 63:
>>             Argument out of range
>>              .
>>
>>         Program received signal SIGABRT, Aborted.
>>
>>         Thank you,
>>         Michael.
>>
>>
>>
>>
>>     -- 
>>     What most experimenters take for granted before they begin their
>>     experiments is infinitely more interesting than any results to
>>     which their experiments lead.
>>     -- Norbert Wiener
>
>     -- 
>     Michael Povolotskyi, PhD
>     Research Assistant Professor
>     Network for Computational Nanotechnology
>     Hall for Discover and Learning Research, Room 441
>     West Lafayette, IN 47907
>     Phone(765) 4949396  <tel:%28765%29%204949396>
>
>
>
>
> -- 
> What most experimenters take for granted before they begin their 
> experiments is infinitely more interesting than any results to which 
> their experiments lead.
> -- Norbert Wiener

-- 
Michael Povolotskyi, PhD
Research Assistant Professor
Network for Computational Nanotechnology
Hall for Discover and Learning Research, Room 441
West Lafayette, IN 47907
Phone (765) 4949396

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