[petsc-dev] Hypre error on updated Perlmutter
Mark Adams
mfadams at lbl.gov
Fri Dec 10 08:53:53 CST 2021
And more Perlmutter weirdness.
If I configure with the above CRAY_ACCEL_TARGET=nvidia80 I get this
(configure.log) error. (some CUDA aware MPI related errors)
But if I configure with CRAY_ACCEL_TARGET="" it gets into Kokkos and I get
this configure2.log with:
#error -- unsupported pgc++ configuration! Only pgc++ 18, 19 and 20 are
supported!
I have not seen this before.
As far as the first problem, If I load the cudatoolkit, which they say you
can do *or* set CRAY_ACCEL_TARGET=nvidia80 , the problems go away or maybe
fails before it gets to the first error, but it fails.
I get the configure3 error that has these old warnings, but I'm not sure
why it failed exactly.
This was sort of working yesterday. I did rebase today, but even when
working this has been fragile.
Any suggestions?
Thanks,
Mark
On Thu, Dec 9, 2021 at 1:59 PM Mark Adams <mfadams at lbl.gov> wrote:
> Well I found, accidentally, that turning CUDA aware MPI on with export
> CRAY_ACCEL_TARGET=nvidia80
> seems to have fixed this.
> Not sure what is going on.
>
> On Thu, Dec 9, 2021 at 11:21 AM Mark Adams <mfadams at lbl.gov> wrote:
>
>> I am getting this error. I have built this w/o hypre and the test are
>> fine, including the CUDA tests.
>> Any ideas?
>>
>> I notice that the tests use -dm_mat_type aijcusparse with hypre.
>>
>> Thanks,
>> Mark
>>
>> 08:13 nid003929 adams/fix_mat_ex5k= perlmutter:~/petsc$ make
>> PETSC_DIR=/global/homes/m/madams/petsc
>> PETSC_ARCH=arch-perlmutter-opt-nvidia-cuda check
>> Running check examples to verify correct installation
>> Using PETSC_DIR=/global/homes/m/madams/petsc and
>> PETSC_ARCH=arch-perlmutter-opt-nvidia-cuda
>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process
>> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI
>> processes
>> 1,5c1,70
>> < lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
>> < 0 SNES Function norm 0.0406612
>> < 1 SNES Function norm 4.12227e-06
>> < 2 SNES Function norm 6.098e-11
>> < Number of SNES iterations = 2
>> ---
>> > [0]PETSC ERROR: --------------------- Error Message
>> --------------------------------------------------------------
>> > [0]PETSC ERROR: GPU error
>> > [0]PETSC ERROR: cuda error 46 (cudaErrorDevicesUnavailable) : all
>> CUDA-capable devices are busy or unavailable
>> > [0]PETSC ERROR: See https://petsc.org/release/faq/ for trouble
>> shooting.
>> > [0]PETSC ERROR: Petsc Development GIT revision: v3.16.1-442-gebb4a459f5
>> GIT Date: 2021-12-08 08:59:23 -0500
>> > [0]PETSC ERROR: /global/u2/m/madams/petsc/src/snes/tutorials/./ex19 on
>> a named nid003929 by madams Thu Dec 9 08:13:49 2021
>> > [0]PETSC ERROR: Configure options --CFLAGS=" -g -DLANDAU_DIM=2
>> -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu" --CXXFLAGS=" -g
>> -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu" --FFLAGS="
>> -g -mp=gpu" --with-cc=cc --with-cxx=CC --with-fc=ftn
>> --with-cudac=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc
>> --with-debugging=0 --download-hypre=1 --with-cuda=1 --with-cuda-arch=80
>> --with-mpiexec=srun --with-batch=0 --download-p4est=1 --with-zlib=1
>> --with-make-np=8
>> --prefix=/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9
>> PETSC_ARCH=arch-perlmutter-opt-nvidia-cuda
>> > [0]PETSC ERROR: #1 initialize() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/impls/cupm/cupmdevice.cxx:70
>> > [0]PETSC ERROR: #2 getDevice() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/impls/cupm/cupmdevice.cxx:360
>> > [0]PETSC ERROR: #3 PetscDeviceCreate() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/interface/device.cxx:102
>> > [0]PETSC ERROR: #4 PetscDeviceInitializeDefaultDevice_Internal() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/interface/device.cxx:266
>> > [1]PETSC ERROR: --------------------- Error Message
>> --------------------------------------------------------------
>> > [1]PETSC ERROR: GPU error
>> > [1]PETSC ERROR: cuda error 46 (cudaErrorDevicesUnavailable) : all
>> CUDA-capable devices are busy or unavailable
>> > [1]PETSC ERROR: See https://petsc.org/release/faq/ for trouble
>> shooting.
>> > [1]PETSC ERROR: Petsc Development GIT revision: v3.16.1-442-gebb4a459f5
>> GIT Date: 2021-12-08 08:59:23 -0500
>> > [1]PETSC ERROR: /global/u2/m/madams/petsc/src/snes/tutorials/./ex19 on
>> a named nid003929 by madams Thu Dec 9 08:13:49 2021
>> > [1]PETSC ERROR: Configure options --CFLAGS=" -g -DLANDAU_DIM=2
>> -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu" --CXXFLAGS=" -g
>> -DLANDAU_DIM=2 -DLANDAU_MAX_SPECIES=10 -DLANDAU_MAX_Q=4 -mp=gpu" --FFLAGS="
>> -g -mp=gpu" --with-cc=cc --with-cxx=CC --with-fc=ftn
>> --with-cudac=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc
>> --with-debugging=0 --download-hypre=1 --with-cuda=1 --with-cuda-arch=80
>> --with-mpiexec=srun --with-batch=0 --download-p4est=1 --with-zlib=1
>> --with-make-np=8
>> --prefix=/global/cfs/projectdirs/m3904/petsc/current/perlmutter-opt-nvidia21.9
>> PETSC_ARCH=arch-perlmutter-opt-nvidia-cuda
>> > [1]PETSC ERROR: #1 initialize() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/impls/cupm/cupmdevice.cxx:70
>> > [1]PETSC ERROR: #2 getDevice() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/impls/cupm/cupmdevice.cxx:360
>> > [1]PETSC ERROR: #3 PetscDeviceCreate() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/interface/device.cxx:102
>> > [1]PETSC ERROR: #4 PetscDeviceInitializeDefaultDevice_Internal() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/interface/device.cxx:266
>> > [1]PETSC ERROR: #5 PetscDeviceInitialize() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/interface/device.cxx:227
>> > [1]PETSC ERROR: #6 PCCreate_HYPRE() at
>> /global/u2/m/madams/petsc/src/ksp/pc/impls/hypre/hypre.c:2224
>> > [1]PETSC ERROR: #7 PCSetType() at
>> /global/u2/m/madams/petsc/src/ksp/pc/interface/pcset.c:84
>> > [1]PETSC ERROR: #8 PCSetFromOptions() at
>> /global/u2/m/madams/petsc/src/ksp/pc/interface/pcset.c:154
>> > [1]PETSC ERROR: #9 KSPSetFromOptions() at
>> /global/u2/m/madams/petsc/src/ksp/ksp/interface/itcl.c:356
>> > [1]PETSC ERROR: #10 SNESSetFromOptions() at
>> /global/u2/m/madams/petsc/src/snes/interface/snes.c:1113
>> > [1]PETSC ERROR: #11 main() at ex19.c:150
>> > [1]PETSC ERROR: PETSc Option Table entries:
>> > [1]PETSC ERROR: -da_refine 3
>> > [1]PETSC ERROR: -dm_mat_type aijcusparse
>> > [1]PETSC ERROR: -dm_vec_type cuda
>> > [0]PETSC ERROR: #5 PetscDeviceInitialize() at
>> /global/u2/m/madams/petsc/src/sys/objects/device/interface/device.cxx:227
>> > [0]PETSC ERROR: #6 PCCreate_HYPRE() at
>> /global/u2/m/madams/petsc/src/ksp/pc/impls/hypre/hypre.c:2224
>> > [0]PETSC ERROR: #7 PCSetType() at
>> /global/u2/m/madams/petsc/src/ksp/pc/interface/pcset.c:84
>> > [0]PETSC ERROR: #8 PCSetFromOptions() at
>> /global/u2/m/madams/petsc/src/ksp/pc/interface/pcset.c:154
>> > [0]PETSC ERROR: #9 KSPSetFromOptions() at
>> /global/u2/m/madams/petsc/src/ksp/ksp/interface/itcl.c:356
>> > [0]PETSC ERROR: #10 SNESSetFromOptions() at
>> /global/u2/m/madams/petsc/src/snes/interface/snes.c:1113
>> > [0]PETSC ERROR: #11 main() at ex19.c:150
>> > [0]PETSC ERROR: PETSc Option Table entries:
>> > [0]PETSC ERROR: -da_refine 3
>> > [0]PETSC ERROR: -dm_mat_type aijcusparse
>> > [0]PETSC ERROR: -dm_vec_type cuda
>> > [0]PETSC ERROR: -ksp_norm_type unpreconditioned
>> > [0]PETSC ERROR: -nox
>> > [0]PETSC ERROR: -nox_warning
>> > [0]PETSC ERROR: -pc_type hypre
>> > [0]PETSC ERROR: -snes_monitor_short
>> > [0]PETSC ERROR: -use_gpu_aware_mpi 0
>> > [0]PETSC ERROR: ----------------End of Error Message -------send entire
>> error message to petsc-maint at mcs.anl.gov----------
>> > [1]PETSC ERROR: -ksp_norm_type unpreconditioned
>> > [1]PETSC ERROR: -nox
>> > [1]PETSC ERROR: -nox_warning
>> > [1]PETSC ERROR: -pc_type hypre
>> > [1]PETSC ERROR: -snes_monitor_short
>> > [1]PETSC ERROR: -use_gpu_aware_mpi 0
>> > [1]PETSC ERROR: ----------------End of Error Message -------send entire
>> error message to petsc-maint at mcs.anl.gov----------
>> > MPICH Notice [Rank 0] [job id 832277.2] [Thu Dec 9 08:13:50 2021]
>> [nid003929] - Abort(97) (rank 0 in comm 0): application called
>> MPI_Abort(MPI_COMM_WORLD, 97) - process 0
>> >
>> > aborting job:
>> > application called MPI_Abort(MPI_COMM_WORLD, 97) - process 0
>> > MPICH Notice [Rank 1] [job id 832277.2] [Thu Dec 9 08:13:50 2021]
>> [nid003929] - Abort(97) (rank 1 in comm 0): application called
>> MPI_Abort(MPI_COMM_WORLD, 97) - process 1
>> >
>> > aborting job:
>> > application called MPI_Abort(MPI_COMM_WORLD, 97) - process 1
>> > srun: error: nid003929: task 1: Exited with exit code 255
>> > srun: launch/slurm: _step_signal: Terminating StepId=832277.2
>> > slurmstepd: error: *** STEP 832277.2 ON nid003929 CANCELLED AT
>> 2021-12-09T16:13:50 ***
>> > srun: error: nid003929: task 0: Exited with exit code 255
>> /global/homes/m/madams/petsc/src/snes/tutorials
>> Possible problem with ex19 running with hypre, diffs above
>> =========================================
>> C/C++ example src/snes/tutorials/ex19 run successfully with cuda
>> Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI
>> process
>>
>
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