Executing: uname -s stdout: Linux ================================================================================ ================================================================================ Starting configure run at Fri, 10 Dec 2021 06:40:58 -0800 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-cc=cc --with-cxx=CC --with-fc=ftn --with-cudac=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/nvcc --with-debugging=0 --with-cuda=1 --with-cuda-arch=80 --with-mpiexec=srun --with-batch=0 --download-kokkos --download-kokkos-kernels --with-kokkos-kernels-tpl=0 --with-make-np=8 PETSC_ARCH=arch-perlmutter-opt-nvidia-kokkos-cuda Working directory: /global/u2/m/madams/petsc Machine platform: ('Linux', 'login19', '5.3.18-24.75_10.0.190-cray_shasta_c', '#1 SMP Sun Nov 14 13:50:27 UTC 2021 (d6d9e9b)', 'x86_64', 'x86_64') Python version: 2.7.18 (default, Mar 04 2021, 23:25:57) [GCC] ================================================================================ Environmental variables CRAY_LMOD_NET=ofi/1.0 CRAY_MPICH_BASEDIR=/opt/cray/pe/mpich/8.1.11/ofi CPU=x86_64 LMOD_SITE_NAME=NERSC LESS=-M -I -R CRAY_PERFTOOLS_PREFIX=/opt/cray/pe/perftools/21.10.0 PE_LIBSCI_GENCOMPILERS_GNU_x86_64=9.1 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CRAY_LIBSCI_BASE_DIR=/opt/cray/pe/libsci/21.08.1.2 CRAY_DSMML_VER=0.2.2 XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB BASH_FUNC_module%%=() { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } PAT_RT_HWPC=1 CRAY_LMOD_COMPILER=nvidia/20 SHELL=/bin/bash PE_DSMML_MODULE_NAME=cray-dsmml XTPE_LINK_TYPE=dynamic PE_PERFTOOLS_MPICH_LIBDIR=/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib __LMOD_REF_COUNT_PE_CRAYCLANG_FIXED_PKGCONFIG_PATH=/opt/cray/pe/libsci/21.08.1.2/CRAY/9.0/x86_64/lib/pkgconfig:1 BASH_ENV=/usr/share/lmod/lmod/init/bash PE_LIBSCI_GENCOMPILERS_NVIDIA_x86_64=20.7 LIBGL_DEBUG=quiet LMOD_SYSHOST=perlmutter LMOD_CACHED_LOADS=no DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/13302/bus CMAKE_DIR=/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0 __LMOD_REF_COUNT_PE_PRODUCT_LIST=CRAY_LIBSCI:1;CRAYPE:1;CRAYPE_X86_ROME:1;PERFTOOLS:1;CRAYPAT:1;CRAY_HPC_SDK:1;CRAY_ACCEL:1 PE_LIBSCI_GENCOMPS_NVIDIA_x86_64=207 LESS_ADVANCED_PREPROCESSOR=no CRAY_CPU_TARGET=x86-rome MANPATH=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/doc/man:/opt/cray/pe/libsci/21.08.1.2/man:/opt/cray/pe/man/csmlversion:/opt/cray/pe/mpich/8.1.11/ofi/man:/opt/cray/pe/mpich/8.1.11/man/mpich:/opt/cray/pe/dsmml/0.2.2/dsmml/man:/opt/cray/pe/craype/2.7.12/man:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/man:/opt/cray/pe/perftools/21.10.0/man:/opt/cray/pe/papi/6.0.0.10/share/pdoc/man:/opt/cray/libfabric/1.11.0.4.75/share/man:/usr/share/lmod/lmod/share/man:/usr/local/man:/usr/share/man:/usr/man PETSC_OPTIONS=-use_gpu_aware_mpi 0 JAVA_HOME=/usr/lib64/jvm/java PROFILEREAD=true PE_PKGCONFIG_PRODUCTS=PE_LIBSCI:PE_MPICH:PE_DSMML:PE_XPMEM PE_MPICH_GTL_LIBS_amd_gfx908=-lmpi_gtl_hsa KMP_AFFINITY=balanced XDG_RUNTIME_DIR=/run/user/13302 PE_LIBSCI_MODULE_NAME=cray-libsci/21.08.1.2 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_LMFILES_=/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-x86-rome.lua:/opt/cray/modulefiles/libfabric/1.11.0.4.75:/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-network-ofi.lua:/opt/cray/pe/lmod/modulefiles/core/perftools-base/21.10.0.lua:/opt/cray/modulefiles/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta:/opt/cray/pe/lmod/modulefiles/core/nvidia/21.9.lua:/opt/cray/pe/lmod/modulefiles/core/craype/2.7.12.lua:/opt/cray/pe/lmod/modulefiles/core/cray-dsmml/0.2.2.lua:/opt/cray/pe/lmod/modulefiles/comnet/nvidia/20/ofi/1.0/cray-mpich/8.1.11.lua:/opt/cray/pe/lmod/modulefiles/core/cray-libsci/21.08.1.2.lua:/opt/cray/pe/lmod/modulefiles/core/PrgEnv-nvidia/8.2.0.lua:/global/common/software/nersc/shasta-21.11/extra_modulefiles/xalt/2.10.2:/global/common/software/nersc/shasta-21.11/extra_modulefiles/darshan/3.2.1.lua:/global/common/software/nersc/shasta-21.11/extra_modulefiles/cmake/3.22.0.lua:/global/common/software/nersc/shasta-21.11/extra_modulefiles/python/3.9-anaconda-2021.11.lua:/opt/cray/pe/lmod/modulefiles/core/cudatoolkit/21.9_11.4.lua:/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-accel-nvidia80.lua PAGER=less PE_XPMEM_PKGCONFIG_LIBS=cray-xpmem JRE_HOME=/usr/lib64/jvm/java/jre __LMOD_REF_COUNT_LOADEDMODULES=craype-x86-rome:1;libfabric/1.11.0.4.75:1;craype-network-ofi:1;perftools-base/21.10.0:1;xpmem/2.2.40-2.1_3.9__g3cf3325.shasta:1;nvidia/21.9:1;craype/2.7.12:1;cray-dsmml/0.2.2:1;cray-mpich/8.1.11:1;cray-libsci/21.08.1.2:1;PrgEnv-nvidia/8.2.0:1;xalt/2.10.2:1;darshan/3.2.1:1;cmake/3.22.0:1;python/3.9-anaconda-2021.11:1;cudatoolkit/21.9_11.4:1;craype-accel-nvidia80:1 LMOD_DIR=/usr/share/lmod/lmod/libexec CRAY_MPICH_VER=8.1.11 GIT_PS1_SHOWDIRTYSTATE=1 CRAYPAT_ROOT=/opt/cray/pe/perftools/21.10.0 CRAYPAT_LD_LIBRARY_PATH=/opt/cray/pe/gcc-libs:/opt/cray/gcc-libs:/opt/cray/pe/perftools/21.10.0/lib64 PE_CRAYCLANG_FIXED_PKGCONFIG_PATH=/opt/cray/pe/libsci/21.08.1.2/CRAY/9.0/x86_64/lib/pkgconfig CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta/include HUGETLB_VERBOSE=0 PYTHON_DIR=/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11 PKG_CONFIG_PATH=/opt/modulefiles/cudatoolkit:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib/pkgconfig:/opt/cray/pe/dsmml/0.2.2/dsmml/lib/pkgconfig:/opt/cray/pe/craype/2.7.12/pkg-config:/opt/cray/libfabric/1.11.0.4.75/lib64/pkgconfig CONDA_PYTHON_EXE=/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/python MODULEPATH_ROOT=/usr/share/modulefiles LMOD_FAMILY_CUDATOOLKIT=cudatoolkit HOME=/global/homes/m/madams HISTSIZE=1000 LD_LIBRARY_PATH=/usr/local/cuda-11.4/compat:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/11.4/lib64:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/extras/CUPTI/lib64:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/extras/Debugger/lib64:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/nvvm/lib64:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/lib64:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/lib:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/lib64:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/lib:/opt/cray/pe/papi/6.0.0.10/lib64:/opt/cray/libfabric/1.11.0.4.75/lib64 LOADEDMODULES=craype-x86-rome:libfabric/1.11.0.4.75:craype-network-ofi:perftools-base/21.10.0:xpmem/2.2.40-2.1_3.9__g3cf3325.shasta:nvidia/21.9:craype/2.7.12:cray-dsmml/0.2.2:cray-mpich/8.1.11:cray-libsci/21.08.1.2:PrgEnv-nvidia/8.2.0:xalt/2.10.2:darshan/3.2.1:cmake/3.22.0:python/3.9-anaconda-2021.11:cudatoolkit/21.9_11.4:craype-accel-nvidia80 LANG=en_US.UTF-8 LMOD_FAMILY_CRAYPE=craype CONDA_SHLVL=0 PE_MPICH_GTL_DIR_nvidia70=-L/opt/cray/pe/mpich/8.1.11/gtl/lib JAVA_ROOT=/usr/lib64/jvm/java LMOD_SYSTEM_NAME=perlmutter CRAY_DSMML_ROOTDIR=/opt/cray/pe/dsmml/0.2.2 LMOD_IGNORE_CACHE=1 G_BROKEN_FILENAMES=1 __LMOD_REF_COUNT__LMFILES_=/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-x86-rome.lua:1;/opt/cray/modulefiles/libfabric/1.11.0.4.75:1;/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-network-ofi.lua:1;/opt/cray/pe/lmod/modulefiles/core/perftools-base/21.10.0.lua:1;/opt/cray/modulefiles/xpmem/2.2.40-2.1_3.9__g3cf3325.shasta:1;/opt/cray/pe/lmod/modulefiles/core/nvidia/21.9.lua:1;/opt/cray/pe/lmod/modulefiles/core/craype/2.7.12.lua:1;/opt/cray/pe/lmod/modulefiles/core/cray-dsmml/0.2.2.lua:1;/opt/cray/pe/lmod/modulefiles/comnet/nvidia/20/ofi/1.0/cray-mpich/8.1.11.lua:1;/opt/cray/pe/lmod/modulefiles/core/cray-libsci/21.08.1.2.lua:1;/opt/cray/pe/lmod/modulefiles/core/PrgEnv-nvidia/8.2.0.lua:1;/global/common/software/nersc/shasta-21.11/extra_modulefiles/xalt/2.10.2:1;/global/common/software/nersc/shasta-21.11/extra_modulefiles/darshan/3.2.1.lua:1;/global/common/software/nersc/shasta-21.11/extra_modulefiles/cmake/3.22.0.lua:1;/global/common/software/nersc/shasta-21.11/extra_modulefiles/python/3.9-anaconda-2021.11.lua:1;/opt/cray/pe/lmod/modulefiles/core/cudatoolkit/21.9_11.4.lua:1;/opt/cray/pe/lmod/modulefiles/craype-targets/default/craype-accel-nvidia80.lua:1 __LMOD_REF_COUNT_PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH:1 GIT_PS1_SHOWUPSTREAM=auto PE_LIBSCI_FIXED_PRGENV=CRAYCLANG _=../arch-perlmutter-opt-nvidia-kokkos-cuda.py _ModuleTable_Sz_=14 PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 OSTYPE=linux _ModuleTable005_=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 LMOD_FAMILY_CRAYPE_CPU=craype-x86-rome PE_NVIDIA_FIXED_PKGCONFIG_PATH=/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib/pkgconfig PYTHONUSERBASE=/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11 CRAY_DSMML_BASEDIR=/opt/cray/pe/dsmml/0.2.2 PSCRATCH=/pscratch/sd/m/madams CUDA_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4 __LMOD_REF_COUNT_CPATH=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/include:1;/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/include:1 NVIDIA_PATH=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9 CUDATOOLKIT_HOME=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4 CSHEDIT=emacs G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-15,CP1252 LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod CRAYPE_LINK_TYPE=dynamic LMOD_AVAIL_STYLE=grouped:system PE_LIBSCI_VOLATILE_PRGENV=AOCC CRAY GNU NVIDIA GPG_TTY=/dev/pts/1 PE_MPICH_MODULE_NAME=cray-mpich IPM_REPORT=full LMOD_FAMILY_CRAYPE_NETWORK=craype-network-ofi LESSCLOSE=lessclose.sh %s %s CRAY_CUDATOOLKIT_INCLUDE_OPTS=-I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/nvvm/include -I/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/extras/Debugger/include 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PATH=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/libnvvp:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Compute:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Systems/bin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin:/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin:/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin:/global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin:/global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin:/global/common/software/nersc/bin:/opt/cray/pe/craype/2.7.12/bin:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin:/opt/cray/pe/perftools/21.10.0/bin:/opt/cray/pe/papi/6.0.0.10/bin:/opt/cray/libfabric/1.11.0.4.75/bin:/usr/local/bin:/usr/bin:/bin:/usr/lib/mit/bin:/opt/cray/pe/bin:/opt/cray/nvidia/default/bin PE_MPICH_GTL_LIBS_amd_gfx906=-lmpi_gtl_hsa LMOD_FAMILY_CRAYPE_ACCEL=craype-accel-nvidia80 TERM=xterm-256color PS1=\A\[\033[;1m\]\[\033[35m\]$(ret=$?; [ $ret -ne 0 ] && echo -n " $ret")\[\033[;0m\] \[\033[31m\]\h \[\033[36m\]$(__git_ps1 '%s') \[\033[33m\]$NERSC_HOST:\[\033[32m\]\w\[\033[0m\]\$ TZ=America/Los_Angeles CRAY_ACCEL_TARGET=nvidia80 LMOD_FAMILY_CRAYPE_ACCEL_VERSION=false NVHPC=/opt/nvidia/hpc_sdk __LMOD_REF_COUNT_PE_PKGCONFIG_LIBS=cudatoolkit_21.9_11.4:1;darshan-runtime:1;libsci_mpi:1;libsci:1;mpich:1;dsmml:1 CRAY_MPICH_VERSION=8.1.11 CRAY_CUDATOOLKIT_VERSION=21.9_11.4 _ModuleTable003_=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 PE_LIBSCI_GENCOMPS_CRAY_x86_64=90 PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_GTL_DIR_@accelerator@:PE_MPICH_GTL_LIBS_@accelerator@ LIBSCI_BASE_DIR=/opt/cray/pe/libsci/21.08.1.2 NERSC_FAMILY_CUDATOOLKIT=cudatoolkit CRAY_LMOD_CPU=x86-rome/1.0 LMOD_FAMILY_PRGENV_VERSION=8.2.0 _CE_CONDA= CRAY_CUDATOOLKIT_POST_LINK_OPTS=-L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/nvvm/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/extras/Debugger/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/extras/CUPTI/lib64 -L/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/11.4/lib64 -Wl,--as-needed,-lcupti,-lcudart,--no-as-needed -lcuda PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 SSH_AUTH_SOCK=/tmp/ssh-DcgGdIonsq/agent.220030 MPICH_DIR=/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7 CRAY_MPICH_ROOTDIR=/opt/cray/pe/mpich/8.1.11 CRAYPAT_OPTS_EXECUTABLE=libexec64/opts __LMOD_REF_COUNT_PE_NVIDIA_FIXED_PKGCONFIG_PATH=/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib/pkgconfig:1 PE_MPICH_GENCOMPILERS_NVIDIA=20.7 LESSKEY=/etc/lesskey.bin PE_LIBSCI_GENCOMPS_AOCC_x86_64=20 CRAY_CUDATOOLKIT_PREFIX=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4 PE_MPICH_GTL_LIBS_nvidia70=-lmpi_gtl_cuda __LMOD_REF_COUNT_PE_DSMML_PKGCONFIG_LIBS=dsmml:1 PE_LIBSCI_OMP_REQUIRES= CRAY_DSMML_VERSION=0.2.2 PE_MPICH_FIXED_PRGENV=NVIDIA __LMOD_REF_COUNT_PE_MPICH_GENCOMPILERS_NVIDIA=20.7:1 OLDPWD=/global/homes/m/madams PKGCONFIG_ENABLED=1 HOST=login19 CFS=/global/cfs/cdirs PE_LIBSCI_GENCOMPS_GNU_x86_64=91 PWD=/global/homes/m/madams/petsc OFFLOAD_INIT=on_start _ModuleTable004_=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 CRAY_LMOD_MPI=cray-mpich/8.0 CRAY_LD_LIBRARY_PATH=/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/math_libs/11.4/lib64:/opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/lib64:/opt/cray/pe/libsci/21.08.1.2/NVIDIA/20.7/x86_64/lib:/opt/cray/pe/mpich/8.1.11/ofi/nvidia/20.7/lib:/opt/cray/pe/mpich/8.1.11/gtl/lib:/opt/cray/pe/dsmml/0.2.2/dsmml/lib:/opt/cray/pe/perftools/21.10.0/lib64 CONDA_EXE=/global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/conda Files in path provided by default path /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/bin: bin2c computeprof crt cu++filt cuda-gdb cuda-gdbserver cuda-memcheck cuda-uninstaller cudafe++ cuobjdump fatbinary nvcc nvcc.profile nvdisasm nvlink nvprof nvprune nvvp ptxas /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/libnvvp: .eclipseproduct artifacts.xml configuration epl-v10.html features icon.xpm notice.html nvvp nvvp.ini p2 plugins readme /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Compute: EULA.txt docs extras host ncu ncu-ui nv-nsight-cu nv-nsight-cu-cli sections target /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Systems/bin: nsys nsys-ui /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin: mamba conda /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin: qmlmin iptest3 dask-mpi sdbadmin gss-client matplotlib ristosds fc-scan jupyter-kernel navigator-updater curl-config bzgrep xsltproc jupyter-serverextension giftext lz4 runxlrd.py pydoc mpirun elbadmin hydra_nameserver mergesolv fitsheader h5import f2py mpiexec.hydra gif2hdf ahost fc-validate glib-gettextize pycc pal2rgb sqlite3_analyzer gif2webp sphinx-apidoc uic tificc rst2html5.py lzma xzcmp route53 tput jupyter-server zstdgrep gst-discoverer-1.0 ncinfo gsettings sip dwebp pip hdftopal pydoc3 h5mkgrp gio xmlwf bsdtar ncgen tiffcmp icuinfo gencnval cph opj_compress ipython xzgrep conda2solv pngfix qmlimportscanner rst2s5.py h5redeploy instance_events idle3.9 qdoc qtplugininfo dumpsolv hdfed jupyter-nbconvert ziptool makeconv libdeflate-gzip tiffmedian h5debug unidecode zfp qhelpgenerator conda-inspect gobject-query conda-build volint toe xml2-config c_rehash protoc mpivars webpmux pep8 qcollectiongenerator nc-config fitsinfo conda-repo flask hb-view tic mpifort zstdless kvno cookiecutter lzcat gdbus-codegen conda-env gst-inspect-1.0 dbus-send h5c++ pydocstyle mirror_server h5repack wish curve_keygen pytest tiffset xzmore xz opj_decompress pyjson5 libdeflate-gunzip unlzma ttx unzstd djpeg glib-mkenums fetch_file asadmin mpicc designer qdbus mpicxx bokeh dbus-uuidgen sphinx-quickstart infocmp icu-config jpegtran tiff2pdf rst2html4.py jupyter-bundlerextension gst-typefind-1.0 h5cc genbrk klist flake8 samp_hub jpeg2hdf pyflakes launch_instance h5stat s3put JxrDecApp pylsp bzfgrep fc-cat h5ls tiffcomment qdbusviewer cairo-trace watchmedo patchelf lzegrep jupyter-labextension rst2pseudoxml.py zopfli tiff2rgba pcretest nltk h5copy bzdiff mamba ptrepack mturk lzcmp adig glib-genmarshal pygmentize fixqt4headers.pl gifbuild lzmainfo bzless assistant qmllint lss3 bzip2recover qmlprofiler dask-scheduler lz4c bsdcat python dynamodb_load imageio_remove_bin cfadmin dbus-monitor rst2odt_prepstyles.py tabulate conda-pack slugify r8tohdf yapf cwutil conda-convert gif2h5 xmllint mpif77 taskadmin bsdcpio fribidi bzcat conda-content-trust rcc curl cwebp h5unjam h4redeploy isort yapf-diff tqdm tiff2ps bundle_image dbus-launch gtester anaconda dask-ssh hdf24to8 fc-pattern qgltf pg_config k5srvutil hydra_persist hdfcomp 2to3-3.9 sphinx-autogen anaconda-navigator list_instances python3-config pkgdata dbus-test-tool hrepack fax2ps epylint vshow freetype-config jupyter-migrate python3.9-config rst2man.py cq infotocap tclsh8.6 black pixeltool mpichversion reset x86_64-conda-linux-gnu-ld compile_et normalizer xzegrep img2webp jupyter-console libpng16-config qmlplugindump xmlpatternsvalidator qwebengine_convert_dict hdftor8 tset odbcinst gendict gapplication jupyter-kernelspec pasteurize mpif90 isql qdbusxml2cpp .scikit-learn-post-link.sh rst2odt.py pydoc3.9 jupyter-qtconsole pango-list kdestroy dbus-run-session funpack xml2-config.bak gresource bzip2 fonttools zstd zstdmt h5clear h5diff deactivate gdbus python3.9 jpgicc qdbuscpp2xml gst-device-monitor-1.0 openssl rg jlpm nghttp xslt-config bzcmp unlz4 zipmerge fc-cache bunzip2 qdarkstyle aec xmlpatterns sphinx-build pango-view rstpep2html.py gencfu vmake conda-skeleton genrb futurize lsm2bin hdf8to24 fc-conflist lzgrep wish8.6 qta-browser conda-token qtpaths sclient rdjpgcom hdfls spyder imagecodecs tiffinfo libtool cygdb sim_client qlalr jupyter-troubleshoot h4cc iusql pt2to3 wheel jupyter-nbextension tabs hdf2jpeg linkicc glib-compile-schemas fc-query mpiexec ncdump conda-metapackage h52gif rst2html.py f2py3 nosetests skivi acountry png-fix-itxt fitscopy libtoolize anaconda-project jupyter-nbclassic chardetect nccopy glib-compile-resources tiffdump bzmore qml gtester-report dynamodb_dump x86_64-conda_cos6-linux-gnu-ld lzless h5watch xmlcatalog gif2rgb pyftsubset idle3 dbus-daemon jupyter-labhub odbc_config nc3tonc4 tiffcp jupyter hdfimport brotli qt.conf showtable py.test gst-stats-1.0 psicc iptest zstdcat mirror_server_stop ktutil kinit dbus-cleanup-sockets nghttpx conda-server canbusutil qmlcachegen lzfgrep dbrunsli pttree python3 lzmore numba qtattributionsscanner conda-develop pyuic5 glacier lrelease lzmadec qscxmlc h5fc opj_dump xzless jsonschema lz4cat isort-identify-imports blackd hdf2gif wrjpgcom hdp tiffsplit pyrcc5 kswitch h5jam ipython3 conda-verify qmake nc4tonc3 kill_instance moc vba_extract.py ptdump gifclrmp hb-shape qtdiag gst-play-1.0 krb5-config send2trash h2load ppm2tiff cython tiff2fsspec jupyter-notebook uuclient keyring installcheck pcre-config h5repart tifffile hb-subset testsolv mpic++ fax2tiff xzdiff rst2xetex.py h4_ncdump repo2solv fitscheck pycodestyle qdarkstyle.example clear giffix gst-launch-1.0 repc transicc cjpeg h5dump kpasswd fpack xzcat rst2xml.py nghttpd giftool lconvert autopep8 activate h5perf_serial sqlite3 h5format_convert ksu captoinfo hydra_pmi_proxy webpinfo lupdate hdfpack cbrunsli lzdiff dbus-update-activation-environment parkill conda-debug conda-render syncqt.pl nosetests-3.9 pybabel symilar bzegrep pyreverse paltohdf fc-list xzfgrep tiffdither derb dltest cythonize imcopy tiffcrop qhelpconverter zipcmp pkginfo raw2tiff pyami_sendmail fits2bitmap qmltestrunner f2py3.9 jupyter-trust pylint kadmin xzdec isympy qmlscene h4_ncgen rst2latex.py imageio_download_bin binstar jupyter-lab conda-index conda wcslint libpng-config tclsh pylupdate5 linguist unxz pyftmerge pcregrep slencheck ncursesw6-config qmleasing fitsdiff JxrEncApp gio-querymodules 2to3 hdiff qdarkstyle.utils jupyter-run ncgen3 hdfunpac smem zopflipng tiff2bw hb-ot-shape-closure dask-worker pip3 fc-match Warning accessing /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin gives errors: [Errno 2] No such file or directory: '/global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin' /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin: ctest cpack cmake ccmake /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin: darshan-gen-fortran.pl darshan-summary-per-file.sh darshan-gen-cc.pl darshan-config darshan-mk-log-dirs.pl darshan-parser darshan-job-summary.pl darshan-gen-cxx.pl darshan-merge darshan-analyzer dxt_analyzer.py darshan-convert darshan-diff darshan-dxt-parser /global/common/software/nersc/bin: usgrsu myquota take myquota_old fix_perms showquota sqs cmnquota give hpss_get_sorted_files.py cfsquota generate_sorted_list_for_hpss.py /opt/cray/pe/craype/2.7.12/bin: 2.25.0.craype.ld CC cc driver ftn /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin: .cuda-gdbrc .cuda-memcheckrc .ncurc .nsightrc .nsysrc .nvc++rc .nvccrc .nvcrc .nvfortranrc .nvprofrc cuda-gdb cuda-memcheck localrc localrc-lock makelocalrc ncu nsight-sys nsys nv-nsight-cu-cli nvaccelerror nvaccelinfo nvc nvc++ nvcc nvcpuid nvcudainit nvdecode nvextract nvfortran nvprepro nvprof nvsize nvunzip nvzip pgaccelerror pgaccelinfo pgc++ pgcc pgcpuid pgcudainit pgf77 pgf90 pgf95 pgfortran pgprepro pgsize pgunzip pgzip rcfiles tools /opt/cray/pe/perftools/21.10.0/bin: app2 grid_order jman pat_build pat_help pat_info pat_opts pat_report pat_run pat_view reveal /opt/cray/pe/papi/6.0.0.10/bin: papi_avail papi_clockres papi_command_line papi_component_avail papi_cost papi_decode papi_error_codes papi_event_chooser papi_mem_info papi_multiplex_cost papi_native_avail papi_version papi_xml_event_info /opt/cray/libfabric/1.11.0.4.75/bin: fi_info fi_pingpong fi_strerror /usr/local/bin: /usr/bin: .fipscheck.hmac .hsi-4.0.1.3.exe .hsi-5.0.2.p12.exe .htar-4.0.1.3.exe .htar-5.0.2.p12.exe .pftp-client-7.3.exe .pftp-client-7.4.exe DcgmProfTesterKernels.ptx Mail WebKitWebDriver X Xorg Xvfb [ aclocal aclocal-1.15 acpi_listen acpi_validate acpibin acpiexamples acpiexec acpihelp acpinames acpisrc acpixtract addr2line ansible ansible-config ansible-connection ansible-console ansible-doc ansible-galaxy ansible-inventory ansible-playbook ansible-pull ansible-vault appdata2solv appletviewer apropos ar arch arpaname as asn1Coding asn1Decoding asn1Parser aspell aspell-import at atq atrm attr authvar autoconf autoheader autom4te automake automake-1.15 autopoint autoreconf autoscan autoupdate awk b2sum babeltrace babeltrace-log base32 base64 basename bashbug batch bc bison bootctl broadwayd build-classpath build-classpath-directory build-jar-repository bunzip2 busctl bwrap bzcat bzcmp bzdiff bzegrep bzfgrep bzgrep bzip2 bzip2recover bzless bzmore bznew c++ c++filt c_rehash cal callgrind_annotate callgrind_control capinfos captoinfo captype cat catatonit catchsegv catman cc ccmake certutil cfs-state-reporter-spire-agent cg_annotate cg_diff cg_merge chacl chage chardetect chardetect-2.7 chardetect-3.6 chattr chcon check-binary-files checkmedia checksctp chfn chgrp chkconfig chkstat chmem chmod choom chown chronic chronyc chroot chrp-addnote chrt chsh chvt cksum clean-binary-files clear clrunimap cmake cmp cmsutil cmtime col colcrt colrm column combine comm comps2solv conmon copybw copylat corelist cowsay cowthink cp cpack cpan cpio cpp cpp-7 cpupcstat cpupower cray cray-ifmap cray-ifmove cray-ifname create-jar-links crlutil csh csplit ctags ctest cups-config curl curl-config curve_keygen cut cvmfs2 cvmfs_config cvmfs_fsck cvmfs_receiver cvmfs_talk cvt cyrus_sasl_sample_client cyrus_sasl_sample_server dapltest date dbilogstrip dbiprof dbiproxy dbus-cleanup-sockets dbus-daemon dbus-launch dbus-launch.nox11 dbus-monitor dbus-run-session dbus-send dbus-test-tool dbus-update-activation-environment dbus-uuidgen dc dcgmi dcgmproftester10 dcgmproftester11 dd deallocvt deltainfoxml2solv delv desktop-file-edit desktop-file-install desktop-file-validate df diff diff-jars diff3 dig dimax_init dir dircolors dirmngr dirmngr-client dirmngr_ldap dirname dltest dmesg dnsdomainname docker-init domainname dracut dshbak dtest dtestcm dtestsrq dtestx du dump2psl.pl dump2slvl.pl dumpcap dumpkeys dumpsolv dvs-hmi-spire-agent dvs-map-spire-agent dwp dwz easy_install easy_install-2.7 easy_install-3.6 ebrowse echo edit editcap efikeygen efisiglist egrep eject elfedit emacs emacs-gtk emacs-x11 emacsclient embedspu enc2xs encguess env envsubst eqn erb erb.ruby2.5 errno etags eu-addr2line eu-ar eu-elfcmp eu-elfcompress eu-elflint eu-findtextrel eu-make-debug-archive eu-nm eu-objdump eu-ranlib eu-readelf eu-size eu-stack eu-strings eu-strip eu-unstrip ex expand expiry expr extcheck extlinux f2py f2py3 f2py3.6 factor fallocate false fasthash fc-cache fc-cat fc-list fc-match fc-pattern fc-query fc-scan fc-validate fdupes fgconsole fgrep file filesize fillup fincore find find-jar findmnt fips_standalone_hmac fipscheck fipshmac firewall-cmd firewall-offline-cmd firewallctl flex flex++ flint flint_ext flock fluent-binlog-reader fluent-binlog-reader-1.5.2 fluent-binlog-reader.ruby2.5 fluent-binlog-reader.ruby2.5-1.5.2 fluent-ca-generate fluent-ca-generate-1.5.2 fluent-ca-generate.ruby2.5 fluent-ca-generate.ruby2.5-1.5.2 fluent-cat fluent-cat-1.5.2 fluent-cat.ruby2.5 fluent-cat.ruby2.5-1.5.2 fluent-debug fluent-debug-1.5.2 fluent-debug.ruby2.5 fluent-debug.ruby2.5-1.5.2 fluent-gem fluent-gem-1.5.2 fluent-gem.ruby2.5 fluent-gem.ruby2.5-1.5.2 fluent-plugin-config-format fluent-plugin-config-format-1.5.2 fluent-plugin-config-format.ruby2.5 fluent-plugin-config-format.ruby2.5-1.5.2 fluent-plugin-generate fluent-plugin-generate-1.5.2 fluent-plugin-generate.ruby2.5 fluent-plugin-generate.ruby2.5-1.5.2 fluentd fluentd-1.5.2 fluentd.ruby2.5 fluentd.ruby2.5-1.5.2 fmt fold free freetype-config fsfs-access-map funzip funzip-plain fuse-overlayfs fuser fusermount fwtrace g++ g++-7 g13 g2r gapplication gawk gcc gcc-7 gcc-ar gcc-ar-7 gcc-nm gcc-nm-7 gcc-ranlib gcc-ranlib-7 gconf-merge-tree gconftool-2 gconftool-rebuild gcore gcov gcov-7 gcov-dump gcov-dump-7 gcov-tool gcov-tool-7 gdb gdb-add-index gdbus gdbus-codegen gdk-pixbuf-csource gdk-pixbuf-pixdata gdk-pixbuf-query-loaders-64 gedit gem gem.ruby2.5 gem2rpm gem2rpm-0.10.1 gem2rpm.ruby2.5 gem2rpm.ruby2.5-0.10.1 genDDNSkey gencat gendiff genhash geqn get_kernel_version getconf getent getfacl getfattr gethostip getkeycodes getopt gettext gettext.sh gettextize getunimap gfortran gfortran-7 gio gio-launch-desktop gio-querymodules-64 git git-lfs git-new-workdir git-receive-pack git-shell git-upload-archive git-upload-pack glib-compile-resources glib-compile-schemas glib-genmarshal glib-gettextize glib-mkenums gmake gnuctags go gobject-query gofmt goss gpasswd gpg gpg-agent gpg-connect-agent gpg-wks-server gpg-zip gpg2 gpgconf gpgparsemail gpgscm gpgsm gpgtar gpgv gpgv2 gprof grep gresource groff grog grops grotty groups grub2-editenv grub2-emu grub2-file grub2-fstest grub2-glue-efi grub2-kbdcomp grub2-menulst2cfg grub2-mkfont grub2-mkimage grub2-mklayout grub2-mknetdir grub2-mkpasswd-pbkdf2 grub2-mkrelpath grub2-mkrescue grub2-mkstandalone grub2-mount grub2-render-label grub2-script-check grub2-syslinux2cfg gsettings gsettings-data-convert gst-device-monitor-1.0 gst-discoverer-1.0 gst-play-1.0 gstack gtbl gtester gtester-report gtf gtk-builder-convert gtk-builder-tool gtk-demo gtk-encode-symbolic-svg gtk-launch gtk-query-immodules-2.0-64 gtk-query-immodules-3.0-64 gtk-query-settings gtk-update-icon-cache gtk-update-icon-cache-2.0 gtk-update-icon-cache-3.0 gtk3-icon-browser guess_encoding gunzip gvimtutor gzexe gzip h2ph h2xs hardlink hca_self_test.ofed head heartbeat-spire-agent hexdump host hostid hostname hostnamectl hsi htar hugeadm hugectl hugeedit hwloc-annotate hwloc-bind hwloc-calc hwloc-compress-dir hwloc-diff hwloc-distrib hwloc-gather-cpuid hwloc-gather-topology hwloc-info hwloc-ls hwloc-patch hwloc-ps i2c i386 iasl ib_acme ib_atomic_bw ib_atomic_lat ib_read_bw ib_read_lat ib_send_bw ib_send_lat ib_write_bw ib_write_lat ibcongest ibdiagm.sh ibdiagnet ibdiagnet_csv2xml.py ibdiagpath ibdmchk ibdmtr ibgenperm ibnetsplit ibnlparse ibtopodiff ibv_asyncwatch ibv_devices ibv_devinfo ibv_rc_pingpong ibv_srq_pingpong ibv_uc_pingpong ibv_ud_pingpong ibv_xsrq_pingpong iconv icu-config id idl2wrs ifdata ifnames ifne info infocmp infotocap inotifywait inotifywatch install install-info installation_sources installcheck instmodsh intel-speed-select iokit-config iokit-gather-stats iokit-libecho iokit-lstats iokit-parse-ior iokit-plot-obdfilter iokit-plot-ost iokit-plot-sgpdd ionice ior-survey ipcalc ipcmk ipcrm ipcs iperf3 iptables-xml irb irb.ruby2.5 isohybrid isohybrid.pl isolinux-config isosize isql isutf8 itox itrace iusql jar jarsigner java javac javadoc javah javap jcmd jconsole jdb jhat jinfo jmap join journalctl jp jp-3.6 jps jq jrunscript jsadebugd json_pp jsonschema jsonschema-3.6 jstack jstat jstatd kbd kbd_mode kbdinfo kbdrate kbxutil kernel-install keyctl keyring keytab-lilo keytool kill killall kinit klist kmod kmp-install ksh last lastb lastlog lckdo ld ld.bfd ldapadd ldapcompare ldapdelete ldapexop ldapmodify ldapmodrdn ldappasswd ldapsearch ldapurl ldapwhoami ldd less lessclose.sh lessecho lesskey lessopen.sh lex lexgrog lfs lfs_migrate libnetcfg libpng-config libpng16-config libtool libtoolize line link linux32 linux64 lksh llobdstat llstat ln lnstat loadkeys loadunimap locale localectl localedef logger loginctl logname lognormalizer look ls lsattr lsb-release lsb_release lsblk lscpu lsinitrd lsipc lslocks lslogins lsmem lsmod lsns lsof lss16toppm lstopo lstopo-no-graphics lua lua5.3 luac luac5.3 luacheck luacov lwp-download lwp-dump lwp-mirror lwp-request lzcat lzcmp lzdiff lzegrep lzfgrep lzgrep lzless lzma lzmadec lzmainfo lzmore m17n-db m4 mail mailx make makedumpfile makedumpfile-R.pl man mandb manpath mapscrn mariadb mariadb-admin mariadb-check mariadb-dump mariadb-import mariadb-show mariadb_config mariadbd-safe-helper mckey mcookie mcra mcreate md5pass md5sum mdevices_info mdig mds-survey memdiskfind memhog merge-pciids mergecap mergesolv mesg mft_uninstall.sh mget_temp mget_temp_ext migratepages migspeed minit mispipe mkdir mkdiskimage mkfifo mkhpsstok.pl mkinfodir mknod mksh mktemp mkzimage_cmdline mlnx_dump_parser mlnx_perf mlnx_qos mlx_fpga mlx_fpga_ext mlx_fs_dump mlxburn mlxcables mlxcables_ext mlxconfig mlxdump mlxdump_ext mlxfwmanager mlxfwreset mlxfwstress mlxfwstress_ext mlxgearbox mlxi2c mlxlink mlxlink_ext mlxmcg mlxmdio mlxpci mlxphyburn mlxprivhost mlxreg mlxreg_ext mlxtrace mlxtrace_ext mlxuptime mlxvpd mmdbresolve mmroff modsign-repackage modsign-verify modutil more mount mountpoint mpi-selector mpi-selector-menu mremote ms_print msgattrib msgcat msgcmp msgcomm msgconv msgen msgexec msgfilter msgfmt msggrep msginit msgmerge msgunfmt msguniq mst mst_cable mst_ib_add mstconfig mstcongestion mstdump mstflint mstfwreset mstfwtrace mstmcra mstmread mstmtserver mstmwrite mstop mstprivhost mstregdump mstresourcedump mstvpd mtserver munge munlink mv mysql mysql_config mysqladmin mysqlcheck mysqld_safe_helper mysqldump mysqlimport mysqlshow namei native2ascii ncurses6-config ncursesw6-config neqn newgidmap newgrp newuidmap ngettext nice nisdomainname nl nm node_exporter nohup nproc nroff nsenter nslookup nss-policy-check nstat nsupdate numactl numademo numastat numfmt nv-fabricmanager nv-hostengine nvidia-bug-report.sh nvidia-cuda-mps-control nvidia-cuda-mps-server nvidia-debugdump nvidia-modprobe nvidia-persistenced nvidia-settings nvidia-smi nvidia-xconfig nvswitch-audit obdfilter-survey objcopy objdump od odbc_config odbcinst ofed_info ofed_rpm_info old omshell openssl openvt oprofile_map_events.pl oprofile_start.sh orbd orca-spire-agent ost-survey outpsfheader p11-kit pack200 pagesize passwd paste patch pathchk pckt_drop pcre-config pdcp pdksh pdsh pee peekfd perf perl perl5.26.1 perlbug perldoc perlivp perlthanks pesigcheck pesign pesign-client pftp pgrep pic piconv pigz pinentry pinentry-curses pinentry-tty ping ping6 pinky pirb pirb-1.0.3 pirb.ruby2.5 pirb.ruby2.5-1.0.3 pk12util pkg-config pkill pl2pm plot-llstat pmap pod2html pod2man pod2text pod2usage podchecker podman podman-remote podselect policytool ppmtolss16 pr precat preconv preunzip prezip prezip-bin printenv printf prlimit prove prtstat pruby pruby-1.0.3 pruby.ruby2.5 pruby.ruby2.5-1.0.3 ps psfaddtable psfgettable psfstriptable psfxtable pslog pstree pstree.x11 ptar ptardiff ptargrep ptx purge pwd pwdx pxelinux-options pybabel pybabel-2.7 pybabel-3.6 pydoc pydoc3 pydoc3.6 pygmentize pygmentize-3.6 pyjwt pyjwt-3.6 pyrsa-decrypt pyrsa-decrypt-3.6 pyrsa-decrypt-bigfile pyrsa-decrypt-bigfile-3.6 pyrsa-encrypt pyrsa-encrypt-3.6 pyrsa-encrypt-bigfile pyrsa-encrypt-bigfile-3.6 pyrsa-keygen pyrsa-keygen-3.6 pyrsa-priv2pub pyrsa-priv2pub-3.6 pyrsa-sign pyrsa-sign-3.6 pyrsa-verify pyrsa-verify-3.6 python python2 python2.7 python3 python3-config python3.6 python3.6-config python3.6m python3.6m-config pyvenv pyvenv-3.6 qperf rake rake.ruby.ruby2.5 rake.ruby2.5 randpkt ranlib raw_ethernet_burst_lat raw_ethernet_bw raw_ethernet_fs_rate raw_ethernet_lat rawshark rbash rcopy rdma_client rdma_server rdma_xclient rdma_xserver rdoc rdoc.ruby.ruby2.5 rdoc.ruby2.5 readelf readlink realpath rebuild-jar-repository recode-sr-latin redis-benchmark redis-check-aof redis-check-rdb redis-cli remunge rename renice reordercap repo2solv repo2solv.sh repomdxml2solv reset resizecons resourcedump resourceparse rev ri ri.ruby.ruby2.5 ri.ruby2.5 riostream rm rmdir rmic rmid rmiregistry routef routel rpcgen rpdcp rping rpm rpm2cpio rpmbuild rpmdb rpmdb2solv rpmgraph rpmkeys rpmlocate rpmmd2solv rpmqpack rpmquery rpms2solv rpmsign rpmspec rpmverify rst2html rst2html4 rst2html4-docutils rst2html5 rst2html5-docutils rst2latex rst2man rst2odt rst2odt_prepstyles rst2pseudoxml rst2s5 rst2xetex rst2xml rstpep2html rstream rsync rsyncstats ruby ruby-find-versioned ruby.ruby2.5 run-with-aspell run_perftest_loopback run_perftest_multi_devices runc runcon rview rvim s3 sacct sacctmgr safe-rm safe-rmdir salloc sanity sattach sbatch sbcast scancel scdaemon schemagen scontrol scp screen screendump script scriptreplay scrontab sctp_darn sctp_status sctp_test sdiag sdiff secure-forward-ca-generate secure-forward-ca-generate-0.4.5 secure-forward-ca-generate.ruby2.5 secure-forward-ca-generate.ruby2.5-0.4.5 sed seff seq serialver servertool setarch setfacl setfattr setfont setkeycodes setleds setlogcons setmetamode setpalette setpriv setsid setterm setvesablank setvtrgb sftp sg sgather sgpdd-survey sh sha1pass sha1sum sha224sum sha256sum sha384sum sha512sum shade-jar sharkd shasum shifter shifterimg showconsolefont showkey shred shuf signtool signver sinfo sipcalc size sjobexitmod sjstat skill slabtop sleep slencheck slingshot-diag slingshot-firmware slingshot-ifname slingshot-ifroute slingshot-snapshot slirp4netns slptool smail smicache smidiff smidump smilint smiquery smistrip smixlate smtpd.py snice soelim sort spawn_console spawn_login sphinx-apidoc sphinx-apidoc-3.6 sphinx-autogen sphinx-autogen-3.6 sphinx-build sphinx-build-3.6 sphinx-quickstart sphinx-quickstart-3.6 spire-agent splain split sponge sprio sprof sqlite3_analyzer squeue squidclient sreport srun ss ssh ssh-add ssh-agent ssh-copy-id ssh-keygen ssh-keyscan sshare ssltap sss_ssh_authorizedkeys sss_ssh_knownhostsproxy sstat stat stdbuf stdlogctl strace strace-graph strace-log-merge strigger strings strip stty su sudo sudoedit sudoreplay sum suse-update-mime-defaults susetags2solv sview svn svn-bench svn-populate-node-origins-index svn_apply_autoprops.py svnadmin svnauthz svnauthz-validate svnbench svndiff svndumpfilter svnfsfs svngrep svnlook svnmucc svnraisetreeconflict svnrdump svnserve svnsync svnversion sync syscfg syslinux syslinux-mtools syslinux2ansi systemctl systemd-analyze systemd-ask-password systemd-cat systemd-cgls systemd-cgtop systemd-delta systemd-detect-virt systemd-escape systemd-firstboot systemd-hwdb systemd-inhibit systemd-machine-id-setup systemd-mount systemd-notify systemd-path systemd-run systemd-socket-activate systemd-stdio-bridge systemd-sysusers systemd-tmpfiles systemd-tty-ask-password-agent systemd-umount tabs tac tack tagmedia tail tar taskset tbl tc_wrap.py tclsh tclsh8.6 tcsh tee telnet test testsolv tethereal text2pcap tic time timedatectl timeout tload tmux tnameserv toe top touch tput tr trace tracepath tracepath6 tree trietool trietool-0.2 troff true truncate trust ts tset tshark tsort tty turbostat tzselect uai-ssh.sh ucmatose ucx_info ucx_perftest ucx_read_profile udaddy udevadm udpong ul ulockmgr_server umount uname uname26 uncompress unexpand unicode_start unicode_stop unidecode unidecode-3.6 uniq unlink unlzma unmunge unpack200 unpigz unshare unxz unzip unzip-plain unzipsfx unzipsfx-plain update-desktop-database update-mime-database updateinfoxml2solv uptime users utmpdump uuidgen uuidparse valgrind valgrind-di-server valgrind-listener vdir vdpauinfo vgdb vi vidir view vim vim-nox11 vimdiff vimtutor vipe vitmp vlock vmstat w wall watch watchgnupg wc wdctl wget whatis whereis which who whoami withsctp wmidump wmixtract word-list-compress wqdump wqdump_ext write wsdump.py wsdump.py-3.6 wsgen wsimport x86_64 x86_64-suse-linux-gnu-pkg-config x86_energy_perf_policy xargs xauth xconv.pl xdg-dbus-proxy xf86debug xgettext xjc xkbcomp xml2-config xmlcatalog xmllint xorg-backtrace xsltproc xsubpp xxd xz xzcat xzcmp xzdec xzdiff xzegrep xzfgrep xzgrep xzless xzmore xznew yacc yes ypcat ypchfn ypchsh ypdomainname ypmatch yppasswd ypwhich yzpper zcat zcmp zdiff zegrep zfgrep zforce zgrep zip zipcloak zipdetails zipgrep zipgrep-plain zipinfo zipnote zipsplit zless zmore znew zrun zsh zypp-CheckAccessDeleted zypp-NameReqPrv zypper update_sshproxy_revocation_list.sh /bin: arch awk basename bash cat chgrp chmod chown chvt clrunimap cp cpio csh date dbus-cleanup-sockets dbus-daemon dbus-monitor dbus-send dbus-test-tool dbus-update-activation-environment dbus-uuidgen dd deallocvt df dmesg dnsdomainname domainname dumpkeys echo egrep ex false fgconsole fgrep fillup find findmnt fsync fuser gawk getkeycodes getunimap grep guess_encoding gunzip gzip hostname ip kbd_mode kbdinfo kbdrate keyctl kill ksh lksh ln loadkeys loadunimap logger login ls lsblk lsmod mail mapscrn md5sum mkdir mknod mksh mktemp mlnx_conf_mgr.sh mlnx_interface_mgr.sh more mount mv nisdomainname openvt outpsfheader pdksh pgrep pidof ping ping6 pkill ps psfaddtable psfgettable psfstriptable psfxtable pwd readlink resizecons rm rmdir rpm screendump sed setfont setkeycodes setleds setlogcons setmetamode setpalette setvesablank setvtrgb sh showconsolefont showkey sleep sort spawn_console spawn_login stat stty su sync systemctl systemd systemd-ask-password tar tcsh touch tracepath tracepath6 true umount uname unicode_start unicode_stop usleep vi vim ypdomainname zcat zsh /usr/lib/mit/bin: gss-client k5srvutil kadmin kdestroy kinit klist kpasswd ksu kswitch ktutil kvno sclient sim_client uuclient /opt/cray/pe/bin: set_default set_default_master set-gcc-libs Warning accessing /opt/cray/nvidia/default/bin gives errors: [Errno 2] No such file or directory: '/opt/cray/nvidia/default/bin' ============================================================================================= TESTING: configureExternalPackagesDir from config.framework(/global/u2/m/madams/petsc/config/BuildSystem/config/framework.py:1029) serialEvaluation: initial cxxDialectRanges ('c++03', 'c++17') serialEvaluation: child kokkos raised minimum cxx dialect version to c++14 serialEvaluation: new cxxDialectRanges ('c++14', 'c++17') child config.utilities.macosFirewall 0.000005 ============================================================================================= TESTING: configureDebuggers from config.utilities.debuggers(/global/u2/m/madams/petsc/config/BuildSystem/config/utilities/debuggers.py:21) Find a default debugger and determine its arguments Executing: uname -s stdout: Linux Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/bin/gdb...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/libnvvp/gdb...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Compute/gdb...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Systems/bin/gdb...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/gdb...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/gdb...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/gdb...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/gdb...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/gdb...not found Checking for program /global/common/software/nersc/bin/gdb...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/gdb...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/gdb...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/gdb...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/gdb...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Defined "USE_DEBUGGER" to ""gdb"" Executing: uname -s stdout: Linux Defined make macro "DSYMUTIL" to "true" Executing: uname -s stdout: Linux child config.utilities.debuggers 0.029652 ============================================================================================= TESTING: configureDirectories from PETSc.options.petscdir(/global/u2/m/madams/petsc/config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 16 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ child PETSc.options.petscdir 0.004949 ============================================================================================= TESTING: getDatafilespath from PETSc.options.dataFilesPath(/global/u2/m/madams/petsc/config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be child PETSc.options.dataFilesPath 0.001184 ============================================================================================= TESTING: configureGit from config.sourceControl(/global/u2/m/madams/petsc/config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/bin/git...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/libnvvp/git...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Compute/git...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Systems/bin/git...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/git...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/git...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/git...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/git...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/git...not found Checking for program /global/common/software/nersc/bin/git...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/git...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/git...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/git...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/git...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.26.2 ============================================================================================= TESTING: configureMercurial from config.sourceControl(/global/u2/m/madams/petsc/config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/bin/hg...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/libnvvp/hg...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Compute/hg...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Systems/bin/hg...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/hg...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/hg...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/hg...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/hg...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/hg...not found Checking for program /global/common/software/nersc/bin/hg...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/hg...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/compilers/bin/hg...not found Checking for program /opt/cray/pe/perftools/21.10.0/bin/hg...not found Checking for program /opt/cray/pe/papi/6.0.0.10/bin/hg...not found Checking for program /opt/cray/libfabric/1.11.0.4.75/bin/hg...not found Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/lib/mit/bin/hg...not found Checking for program /opt/cray/pe/bin/hg...not found Checking for program /opt/cray/nvidia/default/bin/hg...not found Checking for program /global/homes/m/madams/petsc/lib/petsc/bin/win32fe/hg...not found child config.sourceControl 0.013144 ============================================================================================= TESTING: configureInstallationMethod from PETSc.options.petscclone(/global/u2/m/madams/petsc/config/PETSc/options/petscclone.py:20) lib/petsc/bin/maint exists. This appears to be a repository clone .git directory exists Executing: ['git', 'describe', '--match=v*'] stdout: v3.16.2-382-g120aff91b8 Executing: ['git', 'log', '-1', '--pretty=format:%H'] stdout: 120aff91b82068d3d16a8fc5a1c86b3b0e8d2b8a Executing: ['git', 'log', '-1', '--pretty=format:%ci'] stdout: 2021-12-10 08:43:32 -0500 Executing: ['git', 'rev-parse', '--abbrev-ref', 'HEAD'] stdout: adams/landau-ex2-dynamic-memory Defined "VERSION_GIT" to ""v3.16.2-382-g120aff91b8"" Defined "VERSION_DATE_GIT" to ""2021-12-10 08:43:32 -0500"" Defined "VERSION_BRANCH_GIT" to ""adams/landau-ex2-dynamic-memory"" child PETSc.options.petscclone 0.095398 ============================================================================================= TESTING: setNativeArchitecture from PETSc.options.arch(/global/u2/m/madams/petsc/config/PETSc/options/arch.py:31) ============================================================================================= TESTING: configureArchitecture from PETSc.options.arch(/global/u2/m/madams/petsc/config/PETSc/options/arch.py:43) Checks PETSC_ARCH and sets if not set ============================================================================================= Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-perlmutter-opt-nvidia-kokkos-cuda, ignoring environment: arch-perlmutter-opt-kokkos-nvidia-cuda ============================================================================================= No previous hashfile found Setting hashfile: arch-perlmutter-opt-nvidia-kokkos-cuda/lib/petsc/conf/configure-hash Deleting configure hash file: arch-perlmutter-opt-nvidia-kokkos-cuda/lib/petsc/conf/configure-hash Unable to delete configure hash file: arch-perlmutter-opt-nvidia-kokkos-cuda/lib/petsc/conf/configure-hash child PETSc.options.arch 0.030911 ============================================================================================= TESTING: setInstallDir from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:32) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH Defined make macro "PREFIXDIR" to "/global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-kokkos-cuda" ============================================================================================= TESTING: saveReconfigure from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:76) ============================================================================================= TESTING: cleanConfDir from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:69) ============================================================================================= TESTING: configureInstallDir from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:53) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /global/homes/m/madams/petsc/arch-perlmutter-opt-nvidia-kokkos-cuda/lib/petsc/conf ============================================================================================= TESTING: restoreReconfigure from PETSc.options.installDir(/global/u2/m/madams/petsc/config/PETSc/options/installDir.py:89) child PETSc.options.installDir 0.003051 ============================================================================================= TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/global/u2/m/madams/petsc/config/PETSc/options/externalpackagesdir.py:15) ============================================================================================= TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/global/u2/m/madams/petsc/config/PETSc/options/externalpackagesdir.py:22) child PETSc.options.externalpackagesdir 0.001260 ============================================================================================= TESTING: configureCLanguage from PETSc.options.languages(/global/u2/m/madams/petsc/config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" Defined make macro "CLANGUAGE" to "C" child PETSc.options.languages 0.001628 ============================================================================================= TESTING: resetEnvCompilers from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:2101) ============================================================================================= TESTING: checkEnvCompilers from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:2117) ============================================================================================= TESTING: checkMPICompilerOverride from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:2071) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ============================================================================================= TESTING: requireMpiLdPath from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:2092) OpenMPI wrappers require LD_LIBRARY_PATH set ============================================================================================= TESTING: checkInitialFlags from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:604) Initialize the compiler and linker flags Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Initialized HIPFLAGS to Initialized HIPFLAGS to Initialized LDFLAGS to Initialized SYCLCXXFLAGS to Initialized SYCLCXXFLAGS to Initialized LDFLAGS to Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Initialized CPPFLAGS to Initialized FPPFLAGS to Initialized CUDAPPFLAGS to -Wno-deprecated-gpu-targets Initialized CXXPPFLAGS to Initialized HIPPPFLAGS to Initialized SYCLPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized HIPC_LINKER_FLAGS to [] Initialized SYCLCXX_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ============================================================================================= TESTING: checkCCompiler from config.setCompilers(/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py:787) Locate a functional C compiler Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/bin/cc...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/cuda/11.4/libnvvp/cc...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Compute/cc...not found Checking for program /opt/nvidia/hpc_sdk/Linux_x86_64/21.9/profilers/Nsight_Systems/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/condabin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/python/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/homes/m/madams/.local/perlmutter/3.9-anaconda-2021.11/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/cmake-3.22.0/bin/cc...not found Checking for program /global/common/software/nersc/pm-2021q4/sw/darshan/3.3.1/bin/cc...not found Checking for program /global/common/software/nersc/bin/cc...not found Checking for program /opt/cray/pe/craype/2.7.12/bin/cc...found Defined make macro "CC" to "cc" ===== Checking compiler Executing: cc -c -o /tmp/petsc-E8AMPZ/config.setCompilers/conftest.o -I/tmp/petsc-E8AMPZ/config.setCompilers /tmp/petsc-E8AMPZ/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: nvc-Warning-The -gpu option has no effect unless a language-specific option to enable GPU code generation is used (e.g.: -acc, -mp=gpu, -stdpar, -cuda) Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } ===== Checking linker Executing: cc -c -o /tmp/petsc-E8AMPZ/config.setCompilers/conftest.o -I/tmp/petsc-E8AMPZ/config.setCompilers /tmp/petsc-E8AMPZ/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: nvc-Warning-The -gpu option has no effect unless a language-specific option to enable GPU code generation is used (e.g.: -acc, -mp=gpu, -stdpar, -cuda) Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: cc -o /tmp/petsc-E8AMPZ/config.setCompilers/conftest /tmp/petsc-E8AMPZ/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: nvc-Warning-The -gpu option has no effect unless a language-specific option to enable GPU code generation is used (e.g.: -acc, -mp=gpu, -stdpar, -cuda) Linker output before filtering: nvc-Warning-The -gpu option has no effect unless a language-specific option to enable GPU code generation is used (e.g.: -acc, -mp=gpu, -stdpar, -cuda) : Linker output after filtering: nvc-Warning-The -gpu option has no effect unless a language-specific option to enable GPU code generation is used (e.g.: -acc, -mp=gpu, -stdpar, -cuda): Error testing C compiler: Cannot compile/link C with cc. Deleting "CC" ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- C compiler you provided with -with-cc=cc cannot be found or does not work. Cannot compile/link C with cc. ******************************************************************************* File "/global/u2/m/madams/petsc/config/configure.py", line 473, in petsc_configure framework.configure(out = sys.stdout) File "/global/u2/m/madams/petsc/config/BuildSystem/config/framework.py", line 1393, in configure self.processChildren() File "/global/u2/m/madams/petsc/config/BuildSystem/config/framework.py", line 1381, in processChildren self.serialEvaluation(self.childGraph) File "/global/u2/m/madams/petsc/config/BuildSystem/config/framework.py", line 1356, in serialEvaluation child.configure() File "/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py", line 2148, in configure self.executeTest(self.checkCCompiler) File "/global/u2/m/madams/petsc/config/BuildSystem/config/base.py", line 138, in executeTest ret = test(*args,**kargs) File "/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py", line 792, in checkCCompiler for compiler in self.generateCCompilerGuesses(): File "/global/u2/m/madams/petsc/config/BuildSystem/config/setCompilers.py", line 729, in generateCCompilerGuesses raise RuntimeError('C compiler you provided with -with-cc='+self.argDB['with-cc']+' cannot be found or does not work.'+'\n'+self.mesg) ================================================================================ Finishing configure run at Fri, 10 Dec 2021 06:40:58 -0800 ================================================================================