Error when compiling with SGI MPT

Mon Jan 24 16:29:28 CST 2022

Dear Jim,

Good morning. It will really help. Is it possible to receive them?

Thank you.

Best regards,

Alvin

On Tue, Jan 25, 2022 at 7:22 Jim Edwards <jedwards at ucar.edu> wrote:

> Hi Alvin,
>
> I don't know if this will help but we use pnetcdf with mpt regularly
> without a problem.   I can send you build details if you like.
>
> On Mon, Jan 24, 2022 at 3:07 PM Alvin Christopher Galang Varquez <
> varquez.a.aa at m.titech.ac.jp> wrote:
>
>> Greetings,
>>
>> I have been using intel-mpi with PnetCDF and would like to explore
>> compiling it using SGI MPT.
>> When I run the make check and ptest in batch queue system, I got the
>> following error in the src/utils/ncvalidator/test-suite.log :
>>
>> ===
>> ==========================================================
>>    PnetCDF 1.12.2: src/utils/ncvalidator/test-suite.log
>> ==========================================================
>>
>> # TOTAL: 2
>> # PASS:  0
>> # SKIP:  0
>> # XFAIL: 1
>> # FAIL:  1
>> # XPASS: 0
>> # ERROR: 0
>>
>> .. contents:: :depth: 2
>>
>> XFAIL: xfail_runs.sh
>> ====================
>>
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
>> XFAIL xfail_runs.sh (exit status: 1)
>>
>> FAIL: wrap_runs.sh
>> ==================
>>
>> MPT ERROR: Failed to execute ./tst_open on host r1i5n3 (errno:2)
>> FAIL wrap_runs.sh (exit status: 1)
>> ===
>>
>> Compilation settings:
>> ===
>> module load cuda intel mpt cmake
>> export MPICC=mpicc
>> export MPIF77=mpif90
>> export MPIF90=mpif90
>> export MPICXX=mpicxx
>> export CFLAGS='-O3 -xHost -ip -no-prec-div -static-intel'
>> export CXXFLAGS='-O3 -xHost -ip -no-prec-div -static-intel'
>> export FFLAGS='-O3 -xHost -ip -no-prec-div -static-intel'
>> export FC=mpif90
>> export FF=mpif90
>> export CXX=mpicxx
>> export F77=mpif90
>> export F90=mpif90
>> export CC=mpicc
>> ===
>>
>> ./configure --prefix=(full path)/pnetcdf-1.12.2 --enable-fortran
>> --enable-large-file-test LIBS=-lmpi
>>
>> The relevant error in the make check is,
>> ===
>> make[5]: Entering directory '(full
>> path)/pnetcdf-1.12.2/src/utils/ncvalidator'
>> XFAIL: xfail_runs.sh
>> FAIL: wrap_runs.sh
>>
>> ============================================================================
>> Testsuite summary for PnetCDF 1.12.2
>>
>> ============================================================================
>> # TOTAL: 2
>> # PASS:  0
>> # SKIP:  0
>> # XFAIL: 1
>> # FAIL:  1
>> # XPASS: 0
>> # ERROR: 0
>>
>> ============================================================================
>> See src/utils/ncvalidator/test-suite.log
>> Please report to parallel-netcdf at mcs.anl.gov
>>
>> ============================================================================
>> Makefile:950: recipe for target 'test-suite.log' failed
>> ===
>>
>> Thank you for your time.
>>
>> Best regards,
>>
>> Alvin
>>
>> Varquez, Alvin Christopher Galang
>> Associate Professor
>> Department of Transdisciplinary Science and Engineering
>> Global Scientists and Engineers Program
>> Tokyo Institute of Technology
>>
>> Ishikawadai Building 4 Rm. 403 (mailbox: I4-9)
>> 2-12-1 Ookayama, Meguro-ku,
>> <https://www.google.com/maps/search/2-12-1+Ookayama,+Meguro-ku,%C2%A0+Tokyo+152-8552,+Japan?entry=gmail&source=g>Tokyo
>> 152-8552, Japan
>> <https://www.google.com/maps/search/2-12-1+Ookayama,+Meguro-ku,%C2%A0+Tokyo+152-8552,+Japan?entry=gmail&source=g>
>> Tel/Fax: +81-3 5734-2462 or 2768 (local: 2462 or 2768)
>> E-mail: varquez.a.aa at m.titech.ac.jp
>> Web: *http://educ.titech.ac.jp/tse/eng/faculty/
>> <http://educ.titech.ac.jp/tse/eng/faculty/>*
>>
>>
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>
>
> --
> Jim Edwards
>
> CESM Software Engineer
> National Center for Atmospheric Research
> Boulder, CO
>
-- 
Varquez, Alvin Christopher Galang
Associate Professor
Department of Transdisciplinary Science and Engineering
Tokyo Institute of Technology

Ishikawadai Building 6 Rm. 207 (mailbox: I6-31)
2-12-1 Ookayama, Meguro-ku, Tokyo 152-8552, Japan
Tel/Fax: +81-3 5734-2462 (local: 2462)
E-mail: varquez.a.aa at m.titech.ac.jp
Web: http://educ.titech.ac.jp/tse/eng/faculty/
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