Error when compiling with SGI MPT

[Jim Edwards]

Hi Alvin,

I don't know if this will help but we use pnetcdf with mpt regularly
without a problem.   I can send you build details if you like.

On Mon, Jan 24, 2022 at 3:07 PM Alvin Christopher Galang Varquez <
varquez.a.aa at m.titech.ac.jp> wrote:

> Greetings,
>
> I have been using intel-mpi with PnetCDF and would like to explore
> compiling it using SGI MPT.
> When I run the make check and ptest in batch queue system, I got the
> following error in the src/utils/ncvalidator/test-suite.log :
>
> ===
> ==========================================================
>    PnetCDF 1.12.2: src/utils/ncvalidator/test-suite.log
> ==========================================================
>
> # TOTAL: 2
> # PASS:  0
> # SKIP:  0
> # XFAIL: 1
> # FAIL:  1
> # XPASS: 0
> # ERROR: 0
>
> .. contents:: :depth: 2
>
> XFAIL: xfail_runs.sh
> ====================
>
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> MPT ERROR: Failed to execute ./ncvalidator on host r1i5n3 (errno:2)
> XFAIL xfail_runs.sh (exit status: 1)
>
> FAIL: wrap_runs.sh
> ==================
>
> MPT ERROR: Failed to execute ./tst_open on host r1i5n3 (errno:2)
> FAIL wrap_runs.sh (exit status: 1)
> ===
>
> Compilation settings:
> ===
> module load cuda intel mpt cmake
> export MPICC=mpicc
> export MPIF77=mpif90
> export MPIF90=mpif90
> export MPICXX=mpicxx
> export CFLAGS='-O3 -xHost -ip -no-prec-div -static-intel'
> export CXXFLAGS='-O3 -xHost -ip -no-prec-div -static-intel'
> export FFLAGS='-O3 -xHost -ip -no-prec-div -static-intel'
> export FC=mpif90
> export FF=mpif90
> export CXX=mpicxx
> export F77=mpif90
> export F90=mpif90
> export CC=mpicc
> ===
>
> ./configure --prefix=(full path)/pnetcdf-1.12.2 --enable-fortran
> --enable-large-file-test LIBS=-lmpi
>
> The relevant error in the make check is,
> ===
> make[5]: Entering directory '(full
> path)/pnetcdf-1.12.2/src/utils/ncvalidator'
> XFAIL: xfail_runs.sh
> FAIL: wrap_runs.sh
>
> ============================================================================
> Testsuite summary for PnetCDF 1.12.2
>
> ============================================================================
> # TOTAL: 2
> # PASS:  0
> # SKIP:  0
> # XFAIL: 1
> # FAIL:  1
> # XPASS: 0
> # ERROR: 0
>
> ============================================================================
> See src/utils/ncvalidator/test-suite.log
> Please report to parallel-netcdf at mcs.anl.gov
>
> ============================================================================
> Makefile:950: recipe for target 'test-suite.log' failed
> ===
>
> Thank you for your time.
>
> Best regards,
>
> Alvin
>
> Varquez, Alvin Christopher Galang
> Associate Professor
> Department of Transdisciplinary Science and Engineering
> Global Scientists and Engineers Program
> Tokyo Institute of Technology
>
> Ishikawadai Building 4 Rm. 403 (mailbox: I4-9)
> 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8552, Japan
> Tel/Fax: +81-3 5734-2462 or 2768 (local: 2462 or 2768)
> E-mail: varquez.a.aa at m.titech.ac.jp
> Web: *http://educ.titech.ac.jp/tse/eng/faculty/
> <http://educ.titech.ac.jp/tse/eng/faculty/>*
>
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-- 
Jim Edwards

CESM Software Engineer
National Center for Atmospheric Research
Boulder, CO
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