Unable to pass all the tests with pnetcdf 1.6.1, Intel 15.0.3.048 and Mvapich2 2.1
Craig Tierney - NOAA Affiliate
craig.tierney at noaa.gov
Sun Sep 20 10:18:00 CDT 2015
Wei-keng,
Here is my config.log:
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by parallel-netcdf configure 1.6.1, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --prefix=/apps/pnetcdf/1.6.1-intel-mvapich2
## --------- ##
## Platform. ##
## --------- ##
hostname = fe1
uname -m = x86_64
uname -r = 2.6.32-504.16.2.el6.x86_64
uname -s = Linux
uname -v = #1 SMP Wed Apr 22 06:48:29 UTC 2015
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /apps/intel/composer_xe_2015.3.187/bin/intel64
PATH: /apps/local/bin
PATH: /apps/torque/default/bin
PATH: /apps/torque/default/sbin
PATH: /usr/lib64/qt-3.3/bin
PATH: /apps/moab/default/sbin
PATH: /apps/moab/default/bin
PATH: /apps/mam/default/bin
PATH: /apps/mam/default/sbin
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /sbin
PATH: /bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /home/admin/bin
PATH: /root/bin
PATH: /apps/mvapich2/2.1-intel/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:3229: checking for mpicc
configure:3247: found /apps/mvapich2/2.1-intel/bin/mpicc
configure:3259: result: /apps/mvapich2/2.1-intel/bin/mpicc
configure:3386: checking for gcc
configure:3413: result: /apps/mvapich2/2.1-intel/bin/mpicc
configure:3642: checking for C compiler version
configure:3651: /apps/mvapich2/2.1-intel/bin/mpicc --version >&5
icc (ICC) 15.0.3 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
configure:3662: $? = 0
configure:3651: /apps/mvapich2/2.1-intel/bin/mpicc -v >&5
mpicc for MVAPICH2 version 2.1
icc version 15.0.3 (gcc version 4.4.7 compatibility)
configure:3662: $? = 0
configure:3651: /apps/mvapich2/2.1-intel/bin/mpicc -V >&5
GNU ld version 2.20.51.0.2-5.42.el6 20100205
Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64,
Version 15.0.3.187 Build 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In
function `_start':
(.text+0x20): undefined reference to `main'
configure:3662: $? = 1
configure:3651: /apps/mvapich2/2.1-intel/bin/mpicc -qversion >&5
icc: command line warning #10006: ignoring unknown option '-qversion'
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In
function `_start':
(.text+0x20): undefined reference to `main'
configure:3662: $? = 1
configure:3682: checking whether the C compiler works
configure:3704: /apps/mvapich2/2.1-intel/bin/mpicc conftest.c >&5
configure:3708: $? = 0
configure:3756: result: yes
configure:3759: checking for C compiler default output file name
configure:3761: result: a.out
configure:3767: checking for suffix of executables
configure:3774: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest
conftest.c >&5
configure:3778: $? = 0
configure:3800: result:
configure:3822: checking whether we are cross compiling
configure:3830: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest
conftest.c >&5
configure:3834: $? = 0
configure:3841: ./conftest
configure:3845: $? = 0
configure:3860: result: no
configure:3865: checking for suffix of object files
configure:3887: /apps/mvapich2/2.1-intel/bin/mpicc -c conftest.c >&5
configure:3891: $? = 0
configure:3912: result: o
configure:3916: checking whether we are using the GNU C compiler
configure:3935: /apps/mvapich2/2.1-intel/bin/mpicc -c conftest.c >&5
configure:3935: $? = 0
configure:3944: result: yes
configure:3953: checking whether /apps/mvapich2/2.1-intel/bin/mpicc accepts
-g
configure:3973: /apps/mvapich2/2.1-intel/bin/mpicc -c -g conftest.c >&5
configure:3973: $? = 0
configure:4014: result: yes
configure:4031: checking for /apps/mvapich2/2.1-intel/bin/mpicc option to
accept ISO C89
configure:4094: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:4094: $? = 0
configure:4107: result: none needed
configure:4137: checking for special C compiler options needed for large
files
configure:4182: result: no
configure:4188: checking for _FILE_OFFSET_BITS value needed for large files
configure:4213: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4213: $? = 0
configure:4245: result: no
configure:4332: checking how to make dependencies
configure:4367: result: false
configure:4377: checking how to run the C preprocessor
configure:4408: /apps/mvapich2/2.1-intel/bin/mpicc -E conftest.c
configure:4408: $? = 0
configure:4422: /apps/mvapich2/2.1-intel/bin/mpicc -E conftest.c
conftest.c(16): error #2379: cannot open source file "ac_nonexistent.h"
#include <ac_nonexistent.h>
^
configure:4422: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4447: result: /apps/mvapich2/2.1-intel/bin/mpicc -E
configure:4467: /apps/mvapich2/2.1-intel/bin/mpicc -E conftest.c
configure:4467: $? = 0
configure:4481: /apps/mvapich2/2.1-intel/bin/mpicc -E conftest.c
conftest.c(16): error #2379: cannot open source file "ac_nonexistent.h"
#include <ac_nonexistent.h>
^
configure:4481: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:4510: checking for grep that handles long lines and -e
configure:4568: result: /bin/grep
configure:4573: checking for egrep
configure:4635: result: /bin/grep -E
configure:4640: checking for ANSI C header files
configure:4660: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4660: $? = 0
configure:4733: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:4733: $? = 0
configure:4733: ./conftest
configure:4733: $? = 0
configure:4744: result: yes
configure:4757: checking for sys/types.h
configure:4757: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4757: $? = 0
configure:4757: result: yes
configure:4757: checking for sys/stat.h
configure:4757: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4757: $? = 0
configure:4757: result: yes
configure:4757: checking for stdlib.h
configure:4757: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4757: $? = 0
configure:4757: result: yes
configure:4757: checking for string.h
configure:4757: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4757: $? = 0
configure:4757: result: yes
configure:4757: checking for memory.h
configure:4757: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4757: $? = 0
configure:4757: result: yes
configure:4757: checking for strings.h
configure:4757: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4757: $? = 0
configure:4757: result: yes
configure:4757: checking for inttypes.h
configure:4757: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4757: $? = 0
configure:4757: result: yes
configure:4757: checking for stdint.h
configure:4757: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4757: $? = 0
configure:4757: result: yes
configure:4757: checking for unistd.h
configure:4757: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4757: $? = 0
configure:4757: result: yes
configure:4771: checking malloc.h usability
configure:4771: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:4771: $? = 0
configure:4771: result: yes
configure:4771: checking malloc.h presence
configure:4771: /apps/mvapich2/2.1-intel/bin/mpicc -E conftest.c
configure:4771: $? = 0
configure:4771: result: yes
configure:4771: checking for malloc.h
configure:4771: result: yes
configure:4783: checking for MPI_Comm_rank
configure:4783: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:4783: $? = 0
configure:4783: result: yes
configure:4866: checking for MPI_File_open
configure:4866: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:4866: $? = 0
configure:4866: result: yes
configure:5127: checking for mpicxx
configure:5145: found /apps/mvapich2/2.1-intel/bin/mpicxx
configure:5157: result: /apps/mvapich2/2.1-intel/bin/mpicxx
configure:5350: checking for C++ compiler version
configure:5359: /apps/mvapich2/2.1-intel/bin/mpicxx --version >&5
icpc (ICC) 15.0.3 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
configure:5370: $? = 0
configure:5359: /apps/mvapich2/2.1-intel/bin/mpicxx -v >&5
mpicxx for MVAPICH2 version 2.1
icpc version 15.0.3 (gcc version 4.4.7 compatibility)
configure:5370: $? = 0
configure:5359: /apps/mvapich2/2.1-intel/bin/mpicxx -V >&5
GNU ld version 2.20.51.0.2-5.42.el6 20100205
Intel(R) C++ Intel(R) 64 Compiler XE for applications running on Intel(R)
64, Version 15.0.3.187 Build 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In
function `_start':
(.text+0x20): undefined reference to `main'
configure:5370: $? = 1
configure:5359: /apps/mvapich2/2.1-intel/bin/mpicxx -qversion >&5
icpc: command line warning #10006: ignoring unknown option '-qversion'
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In
function `_start':
(.text+0x20): undefined reference to `main'
configure:5370: $? = 1
configure:5374: checking whether we are using the GNU C++ compiler
configure:5393: /apps/mvapich2/2.1-intel/bin/mpicxx -c conftest.cpp >&5
configure:5393: $? = 0
configure:5402: result: yes
configure:5411: checking whether /apps/mvapich2/2.1-intel/bin/mpicxx
accepts -g
configure:5431: /apps/mvapich2/2.1-intel/bin/mpicxx -c -g conftest.cpp >&5
configure:5431: $? = 0
configure:5472: result: yes
configure:5504: checking for MPI_File_close
configure:5504: /apps/mvapich2/2.1-intel/bin/mpicxx -o conftest -g -O2
conftest.cpp >&5
configure:5504: $? = 0
configure:5504: result: yes
configure:5804: checking for mpif77
configure:5822: found /apps/mvapich2/2.1-intel/bin/mpif77
configure:5834: result: /apps/mvapich2/2.1-intel/bin/mpif77
configure:6081: checking for mpif90
configure:6099: found /apps/mvapich2/2.1-intel/bin/mpif90
configure:6111: result: /apps/mvapich2/2.1-intel/bin/mpif90
configure:6301: checking for Fortran compiler version
configure:6310: /apps/mvapich2/2.1-intel/bin/mpif90 --version >&5
ifort (IFORT) 15.0.3 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
configure:6321: $? = 0
configure:6310: /apps/mvapich2/2.1-intel/bin/mpif90 -v >&5
mpifort for MVAPICH2 version 2.1
ifort version 15.0.3
configure:6321: $? = 0
configure:6310: /apps/mvapich2/2.1-intel/bin/mpif90 -V >&5
GNU ld version 2.20.51.0.2-5.42.el6 20100205
Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on
Intel(R) 64, Version 15.0.3.187 Build 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/for_main.o: In
function `main':
for_main.c:(.text+0x2a): undefined reference to `MAIN__'
configure:6321: $? = 1
configure:6310: /apps/mvapich2/2.1-intel/bin/mpif90 -qversion >&5
ifort: command line warning #10006: ignoring unknown option '-qversion'
/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/for_main.o: In
function `main':
for_main.c:(.text+0x2a): undefined reference to `MAIN__'
configure:6321: $? = 1
configure:6330: checking whether we are using the GNU Fortran compiler
configure:6343: /apps/mvapich2/2.1-intel/bin/mpif90 -c conftest.F >&5
conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when
expecting one of: ( % [ : . = =>
choke me
---------------^
conftest.F(3): error #6218: This statement is positioned incorrectly and/or
has syntax errors.
choke me
---------------^
compilation aborted for conftest.F (code 1)
configure:6343: $? = 1
configure: failed program was:
| program main
| #ifndef __GNUC__
| choke me
| #endif
|
| end
configure:6352: result: no
configure:6358: checking whether /apps/mvapich2/2.1-intel/bin/mpif90
accepts -g
configure:6369: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:6369: $? = 0
configure:6377: result: yes
configure:6412: checking for Fortran flag to compile preprocessed .F files
configure:6437: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.F >&5
configure:6437: $? = 0
configure:6447: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.F >&5
conftest.F(4): #error: can't find include file: ac_nonexistent.h
configure:6447: $? = 1
configure: failed program was:
| program main
|
| #if 1
| #include <ac_nonexistent.h>
| choke me
| #endif
| end
configure:6460: result: none
configure:6486: checking for Fortran flag to compile preprocessed .F90 files
configure:6511: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.F90 >&5
configure:6511: $? = 0
configure:6521: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.F90 >&5
conftest.F90(4): #error: can't find include file: ac_nonexistent.h
configure:6521: $? = 1
configure: failed program was:
| program main
|
| #if 1
| #include <ac_nonexistent.h>
| choke me
| #endif
| end
configure:6534: result: none
configure:6573: checking for Fortran flag to compile preprocessed .F files
configure:6621: result: none
configure:6643: checking how to define symbols for preprocessed Fortran
configure:6665: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -DFOOBAR
-DZORK=42 conftest.F >&5
configure:6665: $? = 0
configure:6674: result: -D
configure:6701: checking for Fortran flag to compile .f90 files
configure:6721: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f90 >&5
configure:6721: $? = 0
configure:6730: result: none
configure:6757: checking for Fortran flag needed to accept fixed-form source
configure:6774: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f90 >&5
conftest.f90(2): error #5082: Syntax error, found IDENTIFIER 'THIS' when
expecting one of: ( % [ : . = =>
C This comment should confuse free-form compilers.
------^
compilation aborted for conftest.f90 (code 1)
configure:6774: $? = 1
configure: failed program was:
|
| C This comment should confuse free-form compilers.
| program main
| end
configure:6774: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -ffixed-form
conftest.f90 >&5
ifort: command line warning #10006: ignoring unknown option '-ffixed-form'
conftest.f90(2): error #5082: Syntax error, found IDENTIFIER 'THIS' when
expecting one of: ( % [ : . = =>
C This comment should confuse free-form compilers.
------^
compilation aborted for conftest.f90 (code 1)
configure:6774: $? = 1
configure: failed program was:
|
| C This comment should confuse free-form compilers.
| program main
| end
configure:6774: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -fixed
conftest.f90 >&5
configure:6774: $? = 0
configure:6783: result: -fixed
configure:6813: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f90 >&5
configure:6813: $? = 0
configure:6824: checking for Fortran flag to compile .f files
configure:6844: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:6844: $? = 0
configure:6853: result: none
configure:6999: checking for Fortran 77 compiler version
configure:7008: /apps/mvapich2/2.1-intel/bin/mpif77 --version >&5
ifort (IFORT) 15.0.3 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
configure:7019: $? = 0
configure:7008: /apps/mvapich2/2.1-intel/bin/mpif77 -v >&5
mpifort for MVAPICH2 version 2.1
ifort version 15.0.3
configure:7019: $? = 0
configure:7008: /apps/mvapich2/2.1-intel/bin/mpif77 -V >&5
GNU ld version 2.20.51.0.2-5.42.el6 20100205
Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on
Intel(R) 64, Version 15.0.3.187 Build 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/for_main.o: In
function `main':
for_main.c:(.text+0x2a): undefined reference to `MAIN__'
configure:7019: $? = 1
configure:7008: /apps/mvapich2/2.1-intel/bin/mpif77 -qversion >&5
ifort: command line warning #10006: ignoring unknown option '-qversion'
/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/for_main.o: In
function `main':
for_main.c:(.text+0x2a): undefined reference to `MAIN__'
configure:7019: $? = 1
configure:7028: checking whether we are using the GNU Fortran 77 compiler
configure:7041: /apps/mvapich2/2.1-intel/bin/mpif77 -c conftest.F >&5
conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when
expecting one of: ( % [ : . = =>
choke me
---------------^
conftest.F(3): error #6218: This statement is positioned incorrectly and/or
has syntax errors.
choke me
---------------^
compilation aborted for conftest.F (code 1)
configure:7041: $? = 1
configure: failed program was:
| program main
| #ifndef __GNUC__
| choke me
| #endif
|
| end
configure:7050: result: no
configure:7056: checking whether /apps/mvapich2/2.1-intel/bin/mpif77
accepts -g
configure:7067: /apps/mvapich2/2.1-intel/bin/mpif77 -c -g conftest.f >&5
configure:7067: $? = 0
configure:7075: result: yes
configure:7111: checking for Fortran flag needed to accept free-form source
configure:7130: /apps/mvapich2/2.1-intel/bin/mpif77 -c -g conftest.f >&5
conftest.f(2): error #5149: Illegal character in statement label field [p]
program freeform
--^
conftest.f(2): error #5149: Illegal character in statement label field [r]
program freeform
---^
conftest.f(2): error #5149: Illegal character in statement label field [o]
program freeform
----^
conftest.f(2): error #5118: First statement in file must not be continued
program freeform
-----^
conftest.f(2): error #5082: Syntax error, found END-OF-STATEMENT when
expecting one of: ( % [ : . = =>
program freeform
------------------^
conftest.f(4): error #5082: Syntax error, found '&' when expecting one of:
( <IDENTIFIER> <CHAR_CON_KIND_PARAM> <CHAR_NAM_KIND_PARAM>
<CHARACTER_CONSTANT> <INTEGER_CONSTANT> ...
print *, 'Hello ', &
--------------------------^
conftest.f(5): error #5082: Syntax error, found END-OF-STATEMENT when
expecting one of: (
'world.'
------------------^
compilation aborted for conftest.f (code 1)
configure:7130: $? = 1
configure: failed program was:
|
| program freeform
| ! FIXME: how to best confuse non-freeform compilers?
| print *, 'Hello ', &
| 'world.'
| end
configure:7130: /apps/mvapich2/2.1-intel/bin/mpif77 -c -g -ffree-form
conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-ffree-form'
conftest.f(2): error #5149: Illegal character in statement label field [p]
program freeform
--^
conftest.f(2): error #5149: Illegal character in statement label field [r]
program freeform
---^
conftest.f(2): error #5149: Illegal character in statement label field [o]
program freeform
----^
conftest.f(2): error #5118: First statement in file must not be continued
program freeform
-----^
conftest.f(2): error #5082: Syntax error, found END-OF-STATEMENT when
expecting one of: ( % [ : . = =>
program freeform
------------------^
conftest.f(4): error #5082: Syntax error, found '&' when expecting one of:
( <IDENTIFIER> <CHAR_CON_KIND_PARAM> <CHAR_NAM_KIND_PARAM>
<CHARACTER_CONSTANT> <INTEGER_CONSTANT> ...
print *, 'Hello ', &
--------------------------^
conftest.f(5): error #5082: Syntax error, found END-OF-STATEMENT when
expecting one of: (
'world.'
------------------^
compilation aborted for conftest.f (code 1)
configure:7130: $? = 1
configure: failed program was:
|
| program freeform
| ! FIXME: how to best confuse non-freeform compilers?
| print *, 'Hello ', &
| 'world.'
| end
configure:7130: /apps/mvapich2/2.1-intel/bin/mpif77 -c -g -FR conftest.f
>&5
configure:7130: $? = 0
configure:7139: result: -FR
configure:7177: /apps/mvapich2/2.1-intel/bin/mpif77 -c -g conftest.f >&5
configure:7177: $? = 0
configure:7231: checking build system type
configure:7245: result: x86_64-unknown-linux-gnu
configure:7265: checking host system type
configure:7278: result: x86_64-unknown-linux-gnu
configure:7302: checking how to get verbose linking output from
/apps/mvapich2/2.1-intel/bin/mpif90
configure:7312: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:7312: $? = 0
configure:7330: /apps/mvapich2/2.1-intel/bin/mpif90 -o conftest -g -v
conftest.f
mpifort for MVAPICH2 version 2.1
ifort version 15.0.3
/apps/intel/composer_xe_2015.3.187/bin/intel64/fortcom
-D__INTEL_COMPILER=1500 -D__INTEL_COMPILER_UPDATE=3 -D__unix__ -D__unix
-D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64
-D__x86_64__ -D__amd64 -D__amd64__ -D_MT
-D__INTEL_COMPILER_BUILD_DATE=20150407 -D__INTEL_OFFLOAD -D__i686
-D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__
-D__tune_pentium4__ -D__SSE2__ -D__SSE2_MATH__ -D__SSE__ -D__SSE_MATH__
-D__MMX__ -mGLOB_pack_sort_init_list -I. -I/apps/mvapich2/2.1-intel/include
-I/apps/mvapich2/2.1-intel/include
-I/apps/intel/composer_xe_2015.3.187/mkl/include
-I/apps/intel/composer_xe_2015.3.187/compiler/include/intel64
-I/apps/intel/composer_xe_2015.3.187/compiler/include -I/usr/local/include
-I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include/
-I/usr/include "-fp_modbits honor_f32_conversion" "-fp_modbits
honor_f64_conversion" -O0 -g2 -simd -offload_host
-mP1OPT_version=15.0-intel64 -mGLOB_diag_file=/tmp/ifortUfVlAR.diag
-mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion
-mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F
-mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447
"-mGLOB_options_string=-I/apps/mvapich2/2.1-intel/include
-I/apps/mvapich2/2.1-intel/include -o conftest -g -v
-L/apps/mvapich2/2.1-intel/lib -lmpifort -Wl,-rpath
-Wl,/apps/mvapich2/2.1-intel/lib -Wl,--enable-new-dtags -lmpi"
-mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE
-mGLOB_compiler_bin_directory=/apps/intel/composer_xe_2015.3.187/bin/intel64
-mP3OPT_emit_line_numbers -mP2OPT_suppress_unreferenced_locals=FALSE
-mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mDEBUG_info_level=2
-mDEBUG_use_indirect_strings=TRUE
-mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF30
-mGLOB_as_output_backup_file_name=/tmp/iforteG4amZas_.s -mGLOB_em64t
-mGLOB_instruction_tuning=0x0 -mGLOB_product_id_code=0x22006d8f
-mGLOB_maintain_errno -mGLOB_noinline_intrinsics -mGLOB_use_base_pointer
-mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8
-mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE
-mGLOB_ansi_alias -mIPOPT_ninl_limit=0 -mIPOPT_ninl_user_level=0
-mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name
-mP2OPT_gen_linux_const_pooling=FALSE -mP2OPT_il0_array_sections=TRUE
-mGLOB_offload_mode=1
-mP2OPT_offload_unique_var_string=ifort0101735587494khhlwn
-mGLOB_opt_level=0 -mIPOPT_args_in_regs=0
-mP2OPT_disam_assume_nonstd_intent_in=FALSE
-mGLOB_imf_mapping_library=/apps/intel/composer_xe_2015.3.187/bin/intel64/libiml_attr.so
-mIPOPT_single_file_compile_and_link=TRUE -mP2OPT_hlo_embed_loopinfo
-mPGOPTI_gen_threadsafe_level=0
-mIPOPT_obj_output_file_name=/tmp/ifortUfVlAR.o
-mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchMXKGa7
-mGLOB_linker_version=2.20.51.0.2 -mGLOB_long_size_64
-mGLOB_routine_pointer_size_64
-mGLOB_driver_tempfile_name=/tmp/iforttempfile43du5F
-mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE
-mGLOB_obj_output_file=/tmp/ifortUfVlAR.o
-mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN
-mP1OPT_source_file_name=conftest.f -mP2OPT_symtab_type_copy=true conftest.f
#include "..." search starts here:
#include <...> search starts here:
.
/apps/mvapich2/2.1-intel/include
/apps/mvapich2/2.1-intel/include
/apps/intel/composer_xe_2015.3.187/mkl/include
/apps/intel/composer_xe_2015.3.187/compiler/include/intel64
/apps/intel/composer_xe_2015.3.187/compiler/include
/usr/local/include
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include
/usr/include/
/usr/include
End of search list.
ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id
-dynamic-linker /lib64/ld-linux-x86-64.so.2 -m elf_x86_64
-L/apps/mvapich2/2.1-intel/lib -o conftest
/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/for_main.o
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/debugger/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64
-L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64/
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/
-L/usr/lib64 -L/usr/lib /tmp/ifortUfVlAR.o -lmpifort -rpath
/apps/mvapich2/2.1-intel/lib --enable-new-dtags -lmpi -Bdynamic -Bstatic
-lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc
-Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic
-lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o
configure:7413: result: -v
configure:7415: checking for Fortran libraries of
/apps/mvapich2/2.1-intel/bin/mpif90
configure:7438: /apps/mvapich2/2.1-intel/bin/mpif90 -o conftest -g -v
conftest.f
mpifort for MVAPICH2 version 2.1
ifort version 15.0.3
/apps/intel/composer_xe_2015.3.187/bin/intel64/fortcom
-D__INTEL_COMPILER=1500 -D__INTEL_COMPILER_UPDATE=3 -D__unix__ -D__unix
-D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64
-D__x86_64__ -D__amd64 -D__amd64__ -D_MT
-D__INTEL_COMPILER_BUILD_DATE=20150407 -D__INTEL_OFFLOAD -D__i686
-D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__
-D__tune_pentium4__ -D__SSE2__ -D__SSE2_MATH__ -D__SSE__ -D__SSE_MATH__
-D__MMX__ -mGLOB_pack_sort_init_list -I. -I/apps/mvapich2/2.1-intel/include
-I/apps/mvapich2/2.1-intel/include
-I/apps/intel/composer_xe_2015.3.187/mkl/include
-I/apps/intel/composer_xe_2015.3.187/compiler/include/intel64
-I/apps/intel/composer_xe_2015.3.187/compiler/include -I/usr/local/include
-I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include/
-I/usr/include "-fp_modbits honor_f32_conversion" "-fp_modbits
honor_f64_conversion" -O0 -g2 -simd -offload_host
-mP1OPT_version=15.0-intel64 -mGLOB_diag_file=/tmp/iforttkO9XX.diag
-mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion
-mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F
-mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447
"-mGLOB_options_string=-I/apps/mvapich2/2.1-intel/include
-I/apps/mvapich2/2.1-intel/include -o conftest -g -v
-L/apps/mvapich2/2.1-intel/lib -lmpifort -Wl,-rpath
-Wl,/apps/mvapich2/2.1-intel/lib -Wl,--enable-new-dtags -lmpi"
-mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE
-mGLOB_compiler_bin_directory=/apps/intel/composer_xe_2015.3.187/bin/intel64
-mP3OPT_emit_line_numbers -mP2OPT_suppress_unreferenced_locals=FALSE
-mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mDEBUG_info_level=2
-mDEBUG_use_indirect_strings=TRUE
-mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF30
-mGLOB_as_output_backup_file_name=/tmp/ifortdOtDGmas_.s -mGLOB_em64t
-mGLOB_instruction_tuning=0x0 -mGLOB_product_id_code=0x22006d8f
-mGLOB_maintain_errno -mGLOB_noinline_intrinsics -mGLOB_use_base_pointer
-mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8
-mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE
-mGLOB_ansi_alias -mIPOPT_ninl_limit=0 -mIPOPT_ninl_user_level=0
-mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name
-mP2OPT_gen_linux_const_pooling=FALSE -mP2OPT_il0_array_sections=TRUE
-mGLOB_offload_mode=1
-mP2OPT_offload_unique_var_string=ifort010383805868DN6swo
-mGLOB_opt_level=0 -mIPOPT_args_in_regs=0
-mP2OPT_disam_assume_nonstd_intent_in=FALSE
-mGLOB_imf_mapping_library=/apps/intel/composer_xe_2015.3.187/bin/intel64/libiml_attr.so
-mIPOPT_single_file_compile_and_link=TRUE -mP2OPT_hlo_embed_loopinfo
-mPGOPTI_gen_threadsafe_level=0
-mIPOPT_obj_output_file_name=/tmp/iforttkO9XX.o
-mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchTZ0RwL
-mGLOB_linker_version=2.20.51.0.2 -mGLOB_long_size_64
-mGLOB_routine_pointer_size_64
-mGLOB_driver_tempfile_name=/tmp/iforttempfileDauLZs
-mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE
-mGLOB_obj_output_file=/tmp/iforttkO9XX.o
-mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN
-mP1OPT_source_file_name=conftest.f -mP2OPT_symtab_type_copy=true conftest.f
#include "..." search starts here:
#include <...> search starts here:
.
/apps/mvapich2/2.1-intel/include
/apps/mvapich2/2.1-intel/include
/apps/intel/composer_xe_2015.3.187/mkl/include
/apps/intel/composer_xe_2015.3.187/compiler/include/intel64
/apps/intel/composer_xe_2015.3.187/compiler/include
/usr/local/include
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include
/usr/include/
/usr/include
End of search list.
ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id
-dynamic-linker /lib64/ld-linux-x86-64.so.2 -m elf_x86_64
-L/apps/mvapich2/2.1-intel/lib -o conftest
/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/for_main.o
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/debugger/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64
-L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64/
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/
-L/usr/lib64 -L/usr/lib /tmp/iforttkO9XX.o -lmpifort -rpath
/apps/mvapich2/2.1-intel/lib --enable-new-dtags -lmpi -Bdynamic -Bstatic
-lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc
-Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic
-lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o
/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o
configure:7634: result: -L/apps/mvapich2/2.1-intel/lib
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/debugger/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64
-L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64/
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/
-L/usr/lib64 -L/usr/lib -lmpifort -lmpi -lifport -lifcore -limf -lsvml -lm
-lipgo -lirc -lpthread -lirc_s -ldl
configure:7650: checking for dummy main to link with Fortran libraries
configure:7684: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c -L/apps/mvapich2/2.1-intel/lib
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/debugger/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64
-L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64/
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/
-L/usr/lib64 -L/usr/lib -lmpifort -lmpi -lifport -lifcore -limf -lsvml -lm
-lipgo -lirc -lpthread -lirc_s -ldl >&5
configure:7684: $? = 0
configure:7729: result: none
configure:7762: checking for Fortran name-mangling scheme
configure:7775: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:7775: $? = 0
configure:7816: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c cfortran_test.o -L/apps/mvapich2/2.1-intel/lib
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/debugger/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64
-L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64/
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/
-L/usr/lib64 -L/usr/lib -lmpifort -lmpi -lifport -lifcore -limf -lsvml -lm
-lipgo -lirc -lpthread -lirc_s -ldl >&5
/tmp/iccel0lbq.o: In function `main':
/misc/whome/admin/software/pnetcdf/parallel-netcdf-1.6.1-intel-mvapich2/conftest.c:46:
undefined reference to `foobar'
configure:7816: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char foobar ();
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return foobar ();
| ;
| return 0;
| }
configure:7816: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c cfortran_test.o -L/apps/mvapich2/2.1-intel/lib
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/debugger/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64
-L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64/
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/
-L/usr/lib64 -L/usr/lib -lmpifort -lmpi -lifport -lifcore -limf -lsvml -lm
-lipgo -lirc -lpthread -lirc_s -ldl >&5
configure:7816: $? = 0
configure:7874: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c cfortran_test.o -L/apps/mvapich2/2.1-intel/lib
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/debugger/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64
-L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64/
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/
-L/usr/lib64 -L/usr/lib -lmpifort -lmpi -lifport -lifcore -limf -lsvml -lm
-lipgo -lirc -lpthread -lirc_s -ldl >&5
configure:7874: $? = 0
configure:7916: result: lower case, underscore, no extra underscore
configure:7957: checking for C-equivalent to Fortran routine "SUB_A"
configure:7979: result: sub_a_
configure:8035: checking for a BSD-compatible install
configure:8103: result: /usr/bin/install -c
configure:8122: checking for gawk
configure:8138: found /bin/gawk
configure:8149: result: gawk
configure:8160: checking whether ln -s works
configure:8164: result: yes
configure:8171: checking whether make sets $(MAKE)
configure:8193: result: yes
configure:8203: checking for egrep
configure:8265: result: /bin/grep -E
configure:8279: checking for m4
configure:8295: found /usr/bin/m4
configure:8306: result: m4
configure:8362: checking m4 flags
configure:8373: result:
configure:8383: checking for ar
configure:8399: found /usr/bin/ar
configure:8410: result: ar
configure:8466: checking ar flags
configure:8471: result: cru
configure:8481: checking for nm
configure:8497: found /usr/bin/nm
configure:8508: result: nm
configure:8564: checking nm flags
configure:8569: result:
configure:8619: checking for ranlib
configure:8635: found /usr/bin/ranlib
configure:8646: result: ranlib
configure:8669: checking for stdbool.h that conforms to C99
configure:8744: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:8744: $? = 0
configure:8751: result: yes
configure:8753: checking for _Bool
configure:8753: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:8753: $? = 0
configure:8753: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
conftest.c(72): error: expected an expression
if (sizeof ((_Bool)))
^
compilation aborted for conftest.c (code 2)
configure:8753: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof ((_Bool)))
| return 0;
| ;
| return 0;
| }
configure:8753: result: yes
configure:8771: checking for an ANSI C-conforming const
configure:8845: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:8845: $? = 0
configure:8852: result: yes
configure:8860: checking for inline
configure:8876: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:8876: $? = 0
configure:8884: result: inline
configure:8905: checking for IEEE floating point format
configure:8943: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:8943: $? = 0
configure:8943: ./conftest
configure:8943: $? = 0
configure:8952: result: yes
configure:8964: checking for strerror
configure:8964: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:8964: $? = 0
configure:8964: result: yes
configure:8964: checking for access
configure:8964: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:8964: $? = 0
configure:8964: result: yes
configure:8964: checking for unlink
configure:8964: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:8964: $? = 0
configure:8964: result: yes
configure:8976: checking search.h usability
configure:8976: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:8976: $? = 0
configure:8976: result: yes
configure:8976: checking search.h presence
configure:8976: /apps/mvapich2/2.1-intel/bin/mpicc -E conftest.c
configure:8976: $? = 0
configure:8976: result: yes
configure:8976: checking for search.h
configure:8976: result: yes
configure:8989: checking for tsearch
configure:8989: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:8989: checking for tdelete
configure:8989: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:8989: $? = 0
configure:8989: result: yes
configure:9007: checking PnetCDF debug mode
configure:9019: result: no
configure:9022: checking for MPI_Offset
configure:9022: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9022: $? = 0
configure:9022: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
conftest.c(49): error: expected an expression
if (sizeof ((MPI_Offset)))
^
compilation aborted for conftest.c (code 2)
configure:9022: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| /* end confdefs.h. */
| #include <mpi.h>
|
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof ((MPI_Offset)))
| return 0;
| ;
| return 0;
| }
configure:9022: result: yes
configure:9033: checking size of MPI_Offset
configure:9038: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9038: $? = 0
configure:9038: ./conftest
configure:9038: $? = 0
configure:9053: result: 8
configure:9070: checking size of MPI_Aint
configure:9075: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9075: $? = 0
configure:9075: ./conftest
configure:9075: $? = 0
configure:9090: result: 8
configure:9127: checking for MPI_Info_dup
configure:9127: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9127: $? = 0
configure:9127: result: yes
configure:9127: checking for MPI_Info_free
configure:9127: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9127: $? = 0
configure:9127: result: yes
configure:9127: checking for MPI_Get_address
configure:9127: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9127: $? = 0
configure:9127: result: yes
configure:9139: checking for MPI_Type_create_subarray
configure:9139: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9139: $? = 0
configure:9139: result: yes
configure:9139: checking for MPI_Type_create_hvector
configure:9139: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9139: $? = 0
configure:9139: result: yes
configure:9139: checking for MPI_Type_create_hindexed
configure:9139: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9139: $? = 0
configure:9139: result: yes
configure:9139: checking for MPI_Type_create_struct
configure:9139: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9139: $? = 0
configure:9139: result: yes
configure:9139: checking for MPI_Type_create_resized
configure:9139: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9139: $? = 0
configure:9139: result: yes
configure:9139: checking for MPI_Type_get_extent
configure:9139: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:9139: $? = 0
configure:9139: result: yes
configure:9152: checking if MPI constant MPI_COMBINER_DUP is defined
configure:9161: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9161: $? = 0
configure:9162: result: yes
configure:9176: checking if MPI constant MPI_COMBINER_HVECTOR_INTEGER is
defined
configure:9185: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9185: $? = 0
configure:9186: result: yes
configure:9200: checking if MPI constant MPI_COMBINER_HINDEXED_INTEGER is
defined
configure:9209: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9209: $? = 0
configure:9210: result: yes
configure:9224: checking if MPI constant MPI_COMBINER_SUBARRAY is defined
configure:9233: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9233: $? = 0
configure:9234: result: yes
configure:9248: checking if MPI constant MPI_COMBINER_DARRAY is defined
configure:9257: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9257: $? = 0
configure:9258: result: yes
configure:9272: checking if MPI constant MPI_COMBINER_RESIZED is defined
configure:9281: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9281: $? = 0
configure:9282: result: yes
configure:9296: checking if MPI constant MPI_COMBINER_STRUCT_INTEGER is
defined
configure:9305: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9305: $? = 0
configure:9306: result: yes
configure:9320: checking if MPI constant MPI_COMBINER_INDEXED_BLOCK is
defined
configure:9329: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9329: $? = 0
configure:9330: result: yes
configure:9344: checking if MPI constant MPI_COMBINER_F90_REAL is defined
configure:9353: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9353: $? = 0
configure:9354: result: yes
configure:9368: checking if MPI constant MPI_COMBINER_F90_INTEGER is defined
configure:9377: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9377: $? = 0
configure:9378: result: yes
configure:9392: checking if MPI constant MPI_COMBINER_F90_COMPLEX is defined
configure:9401: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9401: $? = 0
configure:9402: result: yes
configure:9417: checking if MPI constant MPI_ERR_FILE_EXISTS is defined
configure:9426: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9426: $? = 0
configure:9427: result: yes
configure:9441: checking if MPI constant MPI_ERR_NO_SUCH_FILE is defined
configure:9450: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9450: $? = 0
configure:9451: result: yes
configure:9465: checking if MPI constant MPI_ERR_AMODE is defined
configure:9474: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9474: $? = 0
configure:9475: result: yes
configure:9489: checking if MPI constant MPI_ERR_NOT_SAME is defined
configure:9498: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9498: $? = 0
configure:9499: result: yes
configure:9513: checking if MPI constant MPI_ERR_BAD_FILE is defined
configure:9522: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9522: $? = 0
configure:9523: result: yes
configure:9537: checking if MPI constant MPI_ERR_READ_ONLY is defined
configure:9546: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9546: $? = 0
configure:9547: result: yes
configure:9561: checking if MPI constant MPI_ERR_ACCESS is defined
configure:9570: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9570: $? = 0
configure:9571: result: yes
configure:9585: checking if MPI constant MPI_ERR_NO_SPACE is defined
configure:9594: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9594: $? = 0
configure:9595: result: yes
configure:9609: checking if MPI constant MPI_ERR_QUOTA is defined
configure:9618: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9618: $? = 0
configure:9619: result: yes
configure:9636: checking if MPI datatype MPI_CHAR is defined
configure:9645: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9645: $? = 0
configure:9646: result: yes
configure:9660: checking if MPI datatype MPI_BYTE is defined
configure:9669: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9669: $? = 0
configure:9670: result: yes
configure:9684: checking if MPI datatype MPI_UNSIGNED_CHAR is defined
configure:9693: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9693: $? = 0
configure:9694: result: yes
configure:9708: checking if MPI datatype MPI_SHORT is defined
configure:9717: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9717: $? = 0
configure:9718: result: yes
configure:9732: checking if MPI datatype MPI_UNSIGNED_SHORT is defined
configure:9741: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9741: $? = 0
configure:9742: result: yes
configure:9756: checking if MPI datatype MPI_INT is defined
configure:9765: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9765: $? = 0
configure:9766: result: yes
configure:9780: checking if MPI datatype MPI_UNSIGNED is defined
configure:9789: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9789: $? = 0
configure:9790: result: yes
configure:9804: checking if MPI datatype MPI_LONG is defined
configure:9813: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9813: $? = 0
configure:9814: result: yes
configure:9828: checking if MPI datatype MPI_FLOAT is defined
configure:9837: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9837: $? = 0
configure:9838: result: yes
configure:9852: checking if MPI datatype MPI_DOUBLE is defined
configure:9861: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9861: $? = 0
configure:9862: result: yes
configure:9876: checking if MPI datatype MPI_LONG_LONG_INT is defined
configure:9885: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9885: $? = 0
configure:9886: result: yes
configure:9900: checking if MPI datatype MPI_UNSIGNED_LONG_LONG is defined
configure:9909: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9909: $? = 0
configure:9910: result: yes
configure:9924: checking if MPI datatype MPI_UB is defined
configure:9933: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9933: $? = 0
configure:9934: result: yes
configure:9948: checking if MPI datatype MPI_LB is defined
configure:9957: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9957: $? = 0
configure:9958: result: yes
configure:9972: checking if MPI datatype MPI_OFFSET is defined
configure:9981: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c >&5
configure:9981: $? = 0
configure:9982: result: yes
configure:9998: checking if MPI datatype MPI_CHARACTER is defined
configure:10007: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10007: $? = 0
configure:10008: result: yes
configure:10022: checking if MPI datatype MPI_REAL is defined
configure:10031: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10031: $? = 0
configure:10032: result: yes
configure:10046: checking if MPI datatype MPI_INTEGER is defined
configure:10055: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10055: $? = 0
configure:10056: result: yes
configure:10070: checking if MPI datatype MPI_DOUBLE_PRECISION is defined
configure:10079: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10079: $? = 0
configure:10080: result: yes
configure:10094: checking if MPI datatype MPI_INTEGER1 is defined
configure:10103: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10103: $? = 0
configure:10104: result: yes
configure:10118: checking if MPI datatype MPI_INTEGER2 is defined
configure:10127: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10127: $? = 0
configure:10128: result: yes
configure:10142: checking if MPI datatype MPI_INTEGER4 is defined
configure:10151: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10151: $? = 0
configure:10152: result: yes
configure:10166: checking if MPI datatype MPI_INTEGER8 is defined
configure:10175: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10175: $? = 0
configure:10176: result: yes
configure:10190: checking if MPI datatype MPI_INTEGER16 is defined
configure:10199: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10199: $? = 0
configure:10200: result: yes
configure:10214: checking if MPI datatype MPI_REAL4 is defined
configure:10223: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10223: $? = 0
configure:10224: result: yes
configure:10238: checking if MPI datatype MPI_REAL8 is defined
configure:10247: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10247: $? = 0
configure:10248: result: yes
configure:10262: checking if MPI datatype MPI_REAL16 is defined
configure:10271: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10271: $? = 0
configure:10272: result: yes
configure:10286: checking if MPI datatype MPI_COMPLEX8 is defined
configure:10295: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10295: $? = 0
configure:10296: result: yes
configure:10310: checking if MPI datatype MPI_COMPLEX16 is defined
configure:10319: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10319: $? = 0
configure:10320: result: yes
configure:10334: checking if MPI datatype MPI_COMPLEX32 is defined
configure:10343: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10343: $? = 0
configure:10344: result: yes
configure:10372: checking whether char is unsigned
configure:10399: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10399: $? = 0
configure:10406: result: no
configure:10413: checking whether byte ordering is bigendian
configure:10428: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(100): error: identifier "not" is undefined
not a universal capable compiler
^
conftest.c(100): error: expected a ";"
not a universal capable compiler
^
compilation aborted for conftest.c (code 2)
configure:10428: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| /* end confdefs.h. */
| #ifndef __APPLE_CC__
| not a universal capable compiler
| #endif
| typedef int dummy;
|
configure:10481: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10481: $? = 0
configure:10507: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(114): error: identifier "not" is undefined
not big endian
^
conftest.c(114): error: expected a ";"
not big endian
^
conftest.c(117): warning #12: parsing restarts here after previous syntax
error
;
^
compilation aborted for conftest.c (code 2)
configure:10507: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| /* end confdefs.h. */
| #include <sys/types.h>
| #include <sys/param.h>
|
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| #if BYTE_ORDER != BIG_ENDIAN
| not big endian
| #endif
|
| ;
| return 0;
| }
configure:10667: result: no
configure:10698: checking return type of signal handlers
configure:10724: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(113): error: operand of "*" must be a pointer
return *(signal (0, 0)) (0) == 1;
^
compilation aborted for conftest.c (code 2)
configure:10724: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| /* end confdefs.h. */
| #include <sys/types.h>
| #include <signal.h>
|
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return *(signal (0, 0)) (0) == 1;
| ;
| return 0;
| }
configure:10731: result: void
configure:10739: checking for size_t
configure:10739: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10739: $? = 0
configure:10739: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(144): error: expected an expression
if (sizeof ((size_t)))
^
compilation aborted for conftest.c (code 2)
configure:10739: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| #define RETSIGTYPE void
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof ((size_t)))
| return 0;
| ;
| return 0;
| }
configure:10739: result: yes
configure:10750: checking for off_t
configure:10750: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10750: $? = 0
configure:10750: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(144): error: expected an expression
if (sizeof ((off_t)))
^
compilation aborted for conftest.c (code 2)
configure:10750: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| #define RETSIGTYPE void
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof ((off_t)))
| return 0;
| ;
| return 0;
| }
configure:10750: result: yes
configure:10761: checking for ssize_t
configure:10761: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10761: $? = 0
configure:10761: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(144): error: expected an expression
if (sizeof ((ssize_t)))
^
compilation aborted for conftest.c (code 2)
configure:10761: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| #define RETSIGTYPE void
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof ((ssize_t)))
| return 0;
| ;
| return 0;
| }
configure:10761: result: yes
configure:10770: checking for ptrdiff_t
configure:10770: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10770: $? = 0
configure:10770: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(145): error: expected an expression
if (sizeof ((ptrdiff_t)))
^
compilation aborted for conftest.c (code 2)
configure:10770: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| #define RETSIGTYPE void
| #define HAVE_SSIZE_T 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof ((ptrdiff_t)))
| return 0;
| ;
| return 0;
| }
configure:10770: result: yes
configure:10779: checking for uchar
configure:10779: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(146): error: identifier "uchar" is undefined
if (sizeof (uchar))
^
compilation aborted for conftest.c (code 2)
configure:10779: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| #define RETSIGTYPE void
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof (uchar))
| return 0;
| ;
| return 0;
| }
configure:10779: result: no
configure:10788: checking for ushort
configure:10788: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10788: $? = 0
configure:10788: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(146): error: expected an expression
if (sizeof ((ushort)))
^
compilation aborted for conftest.c (code 2)
configure:10788: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| #define RETSIGTYPE void
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof ((ushort)))
| return 0;
| ;
| return 0;
| }
configure:10788: result: yes
configure:10797: checking for uint
configure:10797: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
configure:10797: $? = 0
configure:10797: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(147): error: expected an expression
if (sizeof ((uint)))
^
compilation aborted for conftest.c (code 2)
configure:10797: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| #define RETSIGTYPE void
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof ((uint)))
| return 0;
| ;
| return 0;
| }
configure:10797: result: yes
configure:10806: checking for longlong
configure:10806: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(148): error: identifier "longlong" is undefined
if (sizeof (longlong))
^
compilation aborted for conftest.c (code 2)
configure:10806: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| #define RETSIGTYPE void
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof (longlong))
| return 0;
| ;
| return 0;
| }
configure:10806: result: no
configure:10815: checking for ulonglong
configure:10815: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
>&5
conftest.c(148): error: identifier "ulonglong" is undefined
if (sizeof (ulonglong))
^
compilation aborted for conftest.c (code 2)
configure:10815: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "parallel-netcdf"
| #define PACKAGE_TARNAME "parallel-netcdf"
| #define PACKAGE_VERSION "1.6.1"
| #define PACKAGE_STRING "parallel-netcdf 1.6.1"
| #define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
| #define PACKAGE_URL ""
| #define PNETCDF_VERSION_MAJOR 1
| #define PNETCDF_VERSION_MINOR 6
| #define PNETCDF_VERSION_SUB 1
| #define PNETCDF_VERSION_PRE
| #define PNETCDF_VERSION "1.6.1"
| #define PNETCDF_RELEASE_DATE "01 Jun 2015"
| #define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_MALLOC_H 1
| #define F77_NAME_LOWER_USCORE /**/
| #define HAVE__BOOL 1
| #define HAVE_STDBOOL_H 1
| #define HAVE_STRERROR 1
| #define HAVE_ACCESS 1
| #define HAVE_UNLINK 1
| #define HAVE_SEARCH_H 1
| #define HAVE_TSEARCH 1
| #define HAVE_TDELETE 1
| #define SIZEOF_MPI_OFFSET 8
| #define SIZEOF_MPI_AINT 8
| #define ENABLE_CDF5 /**/
| #define ENABLE_NONBLOCKING /**/
| #define HAVE_MPI_INFO_DUP 1
| #define HAVE_MPI_INFO_FREE 1
| #define HAVE_MPI_GET_ADDRESS 1
| #define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
| #define HAVE_MPI_TYPE_CREATE_HVECTOR 1
| #define HAVE_MPI_TYPE_CREATE_HINDEXED 1
| #define HAVE_MPI_TYPE_CREATE_STRUCT 1
| #define HAVE_MPI_TYPE_CREATE_RESIZED 1
| #define HAVE_MPI_TYPE_GET_EXTENT 1
| #define HAVE_MPI_COMBINER_DUP 1
| #define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
| #define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
| #define HAVE_MPI_COMBINER_SUBARRAY 1
| #define HAVE_MPI_COMBINER_DARRAY 1
| #define HAVE_MPI_COMBINER_RESIZED 1
| #define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
| #define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
| #define HAVE_MPI_COMBINER_F90_REAL 1
| #define HAVE_MPI_COMBINER_F90_INTEGER 1
| #define HAVE_MPI_COMBINER_F90_COMPLEX 1
| #define HAVE_MPI_ERR_FILE_EXISTS 1
| #define HAVE_MPI_ERR_NO_SUCH_FILE 1
| #define HAVE_MPI_ERR_AMODE 1
| #define HAVE_MPI_ERR_NOT_SAME 1
| #define HAVE_MPI_ERR_BAD_FILE 1
| #define HAVE_MPI_ERR_READ_ONLY 1
| #define HAVE_MPI_ERR_ACCESS 1
| #define HAVE_MPI_ERR_NO_SPACE 1
| #define HAVE_MPI_ERR_QUOTA 1
| #define HAVE_MPI_CHAR 1
| #define HAVE_MPI_BYTE 1
| #define HAVE_MPI_UNSIGNED_CHAR 1
| #define HAVE_MPI_SHORT 1
| #define HAVE_MPI_UNSIGNED_SHORT 1
| #define HAVE_MPI_INT 1
| #define HAVE_MPI_UNSIGNED 1
| #define HAVE_MPI_LONG 1
| #define HAVE_MPI_FLOAT 1
| #define HAVE_MPI_DOUBLE 1
| #define HAVE_MPI_LONG_LONG_INT 1
| #define HAVE_MPI_UNSIGNED_LONG_LONG 1
| #define HAVE_MPI_UB 1
| #define HAVE_MPI_LB 1
| #define HAVE_MPI_OFFSET_DATATYPE 1
| #define HAVE_MPI_CHARACTER 1
| #define HAVE_MPI_REAL 1
| #define HAVE_MPI_INTEGER 1
| #define HAVE_MPI_DOUBLE_PRECISION 1
| #define HAVE_MPI_INTEGER1 1
| #define HAVE_MPI_INTEGER2 1
| #define HAVE_MPI_INTEGER4 1
| #define HAVE_MPI_INTEGER8 1
| #define HAVE_MPI_INTEGER16 1
| #define HAVE_MPI_REAL4 1
| #define HAVE_MPI_REAL8 1
| #define HAVE_MPI_REAL16 1
| #define HAVE_MPI_COMPLEX8 1
| #define HAVE_MPI_COMPLEX16 1
| #define HAVE_MPI_COMPLEX32 1
| #define RETSIGTYPE void
| #define HAVE_SSIZE_T 1
| #define HAVE_PTRDIFF_T 1
| #define HAVE_USHORT 1
| #define HAVE_UINT 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| # ifdef __cplusplus
| extern "C"
| # endif
| int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| if (sizeof (ulonglong))
| return 0;
| ;
| return 0;
| }
configure:10815: result: no
configure:10830: checking size of size_t
configure:10835: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:10835: $? = 0
configure:10835: ./conftest
configure:10835: $? = 0
configure:10849: result: 8
configure:10863: checking size of off_t
configure:10868: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:10868: $? = 0
configure:10868: ./conftest
configure:10868: $? = 0
configure:10882: result: 8
configure:10896: checking size of signed char
configure:10901: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:10901: $? = 0
configure:10901: ./conftest
configure:10901: $? = 0
configure:10915: result: 1
configure:10929: checking size of unsigned char
configure:10934: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:10934: $? = 0
configure:10934: ./conftest
configure:10934: $? = 0
configure:10948: result: 1
configure:10962: checking size of short
configure:10967: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:10967: $? = 0
configure:10967: ./conftest
configure:10967: $? = 0
configure:10981: result: 2
configure:10995: checking size of unsigned short
configure:11000: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11000: $? = 0
configure:11000: ./conftest
configure:11000: $? = 0
configure:11014: result: 2
configure:11028: checking size of int
configure:11033: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11033: $? = 0
configure:11033: ./conftest
configure:11033: $? = 0
configure:11047: result: 4
configure:11061: checking size of unsigned int
configure:11066: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11066: $? = 0
configure:11066: ./conftest
configure:11066: $? = 0
configure:11080: result: 4
configure:11094: checking size of long
configure:11099: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11099: $? = 0
configure:11099: ./conftest
configure:11099: $? = 0
configure:11113: result: 8
configure:11127: checking size of float
configure:11132: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11132: $? = 0
configure:11132: ./conftest
configure:11132: $? = 0
configure:11146: result: 4
configure:11160: checking size of double
configure:11165: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11165: $? = 0
configure:11165: ./conftest
configure:11165: $? = 0
configure:11179: result: 8
configure:11193: checking size of long long
configure:11198: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11198: $? = 0
configure:11198: ./conftest
configure:11198: $? = 0
configure:11212: result: 8
configure:11226: checking size of unsigned long long
configure:11231: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11231: $? = 0
configure:11231: ./conftest
configure:11231: $? = 0
configure:11245: result: 8
configure:11261: checking size of ushort
configure:11266: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11266: $? = 0
configure:11266: ./conftest
configure:11266: $? = 0
configure:11280: result: 2
configure:11296: checking size of uint
configure:11301: /apps/mvapich2/2.1-intel/bin/mpicc -o conftest -g -O2
conftest.c >&5
configure:11301: $? = 0
configure:11301: ./conftest
configure:11301: $? = 0
configure:11315: result: 4
configure:11524: checking for C-equivalent to Fortran routine "SUB"
configure:11545: result: sub_
configure:11563: checking for Fortran "integer*1"
configure:11572: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:11572: $? = 0
configure:11573: result: yes
configure:11602: checking for Fortran "integer*2"
configure:11611: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:11611: $? = 0
configure:11612: result: yes
configure:11641: checking for Fortran "integer*8"
configure:11650: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:11650: $? = 0
configure:11651: result: yes
configure:11686: checking if Fortran "integer*1" is
configure:11696: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
configure:11699: $? = 0
configure:11702: /apps/mvapich2/2.1-intel/bin/mpif90 -g -c conftestf.f
configure:11705: $? = 0
configure:11708: /apps/mvapich2/2.1-intel/bin/mpif90 -o conftest -g
conftestf.o conftest.o
configure:11711: $? = 0
configure:11714: ./conftest
configure:11717: $? = 0
configure:11719: result: "signed char" in C
configure:11762: checking if Fortran "integer*2" is
configure:11772: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
configure:11775: $? = 0
configure:11778: /apps/mvapich2/2.1-intel/bin/mpif90 -g -c conftestf.f
configure:11781: $? = 0
configure:11784: /apps/mvapich2/2.1-intel/bin/mpif90 -o conftest -g
conftestf.o conftest.o
configure:11787: $? = 0
configure:11790: ./conftest
configure:11793: $? = 0
configure:11795: result: "short" in C
configure:11838: checking if Fortran "integer*8" is
configure:11848: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
configure:11851: $? = 0
configure:11854: /apps/mvapich2/2.1-intel/bin/mpif90 -g -c conftestf.f
configure:11857: $? = 0
configure:11860: /apps/mvapich2/2.1-intel/bin/mpif90 -o conftest -g
conftestf.o conftest.o
configure:11863: $? = 0
configure:11866: ./conftest
configure:11869: $? = 1
configure:11848: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
configure:11851: $? = 0
configure:11854: /apps/mvapich2/2.1-intel/bin/mpif90 -g -c conftestf.f
configure:11857: $? = 0
configure:11860: /apps/mvapich2/2.1-intel/bin/mpif90 -o conftest -g
conftestf.o conftest.o
configure:11863: $? = 0
configure:11866: ./conftest
configure:11869: $? = 0
configure:11871: result: "long" in C
configure:11912: checking if Fortran "integer" is
configure:11922: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
configure:11925: $? = 0
configure:11928: /apps/mvapich2/2.1-intel/bin/mpif90 -g -c conftestf.f
configure:11931: $? = 0
configure:11934: /apps/mvapich2/2.1-intel/bin/mpif90 -o conftest -g
conftestf.o conftest.o
configure:11937: $? = 0
configure:11940: ./conftest
configure:11943: $? = 0
configure:11945: result: "int" in C
configure:11984: checking if Fortran "real" is
configure:11994: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
configure:11997: $? = 0
configure:12000: /apps/mvapich2/2.1-intel/bin/mpif90 -g -c conftestf.f
configure:12003: $? = 0
configure:12006: /apps/mvapich2/2.1-intel/bin/mpif90 -o conftest -g
conftestf.o conftest.o
configure:12009: $? = 0
configure:12012: ./conftest
configure:12015: $? = 0
configure:12017: result: "float" in C
configure:12056: checking if Fortran "doubleprecision" is
configure:12066: /apps/mvapich2/2.1-intel/bin/mpicc -c -g -O2 conftest.c
configure:12069: $? = 0
configure:12072: /apps/mvapich2/2.1-intel/bin/mpif90 -g -c conftestf.f
configure:12075: $? = 0
configure:12078: /apps/mvapich2/2.1-intel/bin/mpif90 -o conftest -g
conftestf.o conftest.o
configure:12081: $? = 0
configure:12084: ./conftest
configure:12087: $? = 0
configure:12089: result: "double" in C
configure:12120: checking for Fortran-equivalent to netCDF "byte"
configure:12135: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:12135: $? = 0
configure:12151: result: byte
configure:12157: checking for Fortran-equivalent to netCDF "short"
configure:12172: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:12172: $? = 0
configure:12188: result: integer*2
configure:12201: checking for Fortran NFMPI_OFFSET "integer*8"
configure:12215: /apps/mvapich2/2.1-intel/bin/mpif77 -c -g conftest.f >&5
configure:12215: $? = 0
configure:12229: result: yes
configure:12248: checking Fortran 90 module extension
configure:12270: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:12270: $? = 0
configure:12287: result: mod
configure:12305: checking Fortran 90 module inclusion flag
configure:12327: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:12327: $? = 0
configure:12341: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -Mconftest.dir
-Mconftest.dir conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-Mconftest.dir'
ifort: command line warning #10006: ignoring unknown option '-Mconftest.dir'
conftest.f(3): error #7002: Error in opening the compiled module file.
Check INCLUDE paths. [CONFTEST_MODULE]
use conftest_module
----------^
compilation aborted for conftest.f (code 1)
configure:12341: $? = 1
configure: failed program was:
|
| program main
| use conftest_module
| call conftest_routine
| end program
configure:12341: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -Iconftest.dir
-Iconftest.dir conftest.f >&5
configure:12341: $? = 0
configure:12362: result: -I
configure:12384: checking Fortran 90 module output flag
configure:12412: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -Jsub
conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-Jsub'
configure:12412: $? = 0
configure:12421: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -Jsub
conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-Jsub'
conftest.f(3): error #7002: Error in opening the compiled module file.
Check INCLUDE paths. [CONFTEST_MODULE]
use conftest_module
----------^
compilation aborted for conftest.f (code 1)
configure:12421: $? = 1
configure: failed program was:
|
| program main
| use conftest_module
| call conftest_routine
| end program
configure:12412: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -J sub
conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-J'
ifort: warning #10145: no action performed for file 'sub'
configure:12412: $? = 0
configure:12421: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -J sub
conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-J'
ifort: error #10236: File not found: 'sub'
conftest.f(3): error #7002: Error in opening the compiled module file.
Check INCLUDE paths. [CONFTEST_MODULE]
use conftest_module
----------^
compilation aborted for conftest.f (code 1)
configure:12421: $? = 1
configure: failed program was:
|
| program main
| use conftest_module
| call conftest_routine
| end program
configure:12412: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -fmod=sub
conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-fmod=sub'
configure:12412: $? = 0
configure:12421: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -fmod=sub
conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-fmod=sub'
conftest.f(3): error #7002: Error in opening the compiled module file.
Check INCLUDE paths. [CONFTEST_MODULE]
use conftest_module
----------^
compilation aborted for conftest.f (code 1)
configure:12421: $? = 1
configure: failed program was:
|
| program main
| use conftest_module
| call conftest_routine
| end program
configure:12412: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -moddir=sub
conftest.f >&5
ifort: command line warning #10159: invalid argument for option '-m'
configure:12412: $? = 0
configure:12421: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -moddir=sub
conftest.f >&5
ifort: command line warning #10159: invalid argument for option '-m'
conftest.f(3): error #7002: Error in opening the compiled module file.
Check INCLUDE paths. [CONFTEST_MODULE]
use conftest_module
----------^
compilation aborted for conftest.f (code 1)
configure:12421: $? = 1
configure: failed program was:
|
| program main
| use conftest_module
| call conftest_routine
| end program
configure:12412: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g +moddir=sub
conftest.f >&5
ifort: error #10236: File not found: '+moddir=sub'
configure:12412: $? = 1
configure: failed program was:
|
| module conftest_module
| contains
| subroutine conftest_routine
| write(*,'(a)') 'gotcha!'
| end subroutine
| end module
configure:12412: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -qmoddir=sub
conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-qmoddir=sub'
configure:12412: $? = 0
configure:12421: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -qmoddir=sub
conftest.f >&5
ifort: command line warning #10006: ignoring unknown option '-qmoddir=sub'
conftest.f(3): error #7002: Error in opening the compiled module file.
Check INCLUDE paths. [CONFTEST_MODULE]
use conftest_module
----------^
compilation aborted for conftest.f (code 1)
configure:12421: $? = 1
configure: failed program was:
|
| program main
| use conftest_module
| call conftest_routine
| end program
configure:12412: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -mod sub
conftest.f >&5
configure:12412: $? = 0
configure:12421: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g -mod sub
conftest.f >&5
configure:12421: $? = 0
configure:12443: result: -mod
configure:12473: checking if Fortran 90 compiler capitalizes .mod filenames
configure:12482: /apps/mvapich2/2.1-intel/bin/mpif90 -c -g conftest.f >&5
configure:12482: $? = 0
configure:12492: result: no
configure:12607: checking for manual-page index command
configure:12609: result:
configure:12689: checking for latex
configure:12707: found /usr/bin/latex
configure:12719: result: /usr/bin/latex
configure:12729: checking for dvipdf
configure:12747: found /usr/bin/dvipdf
configure:12759: result: /usr/bin/dvipdf
configure:12945: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by parallel-netcdf config.status 1.6.1, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on fe1
config.status:1052: creating macros.make
config.status:1052: creating Makefile
config.status:1052: creating src/Makefile
config.status:1052: creating src/lib/Makefile
config.status:1052: creating src/lib/pnetcdf.h
config.status:1052: creating src/utils/Makefile
config.status:1052: creating src/utils/ncmpidump/Makefile
config.status:1052: creating src/utils/ncmpidiff/Makefile
config.status:1052: creating src/utils/ncmpigen/Makefile
config.status:1052: creating src/utils/ncmpivalid/Makefile
config.status:1052: creating src/utils/pnetcdf_version/Makefile
config.status:1052: creating test/Makefile
config.status:1052: creating test/common/Makefile
config.status:1052: creating test/nc_test/Makefile
config.status:1052: creating test/C/Makefile
config.status:1052: creating test/test_int/Makefile
config.status:1052: creating test/test_float/Makefile
config.status:1052: creating test/test_double/Makefile
config.status:1052: creating test/test_double_int/Makefile
config.status:1052: creating test/test_dtype/Makefile
config.status:1052: creating test/fandc/Makefile
config.status:1052: creating test/testcases/Makefile
config.status:1052: creating test/nonblocking/Makefile
config.status:1052: creating test/header/Makefile
config.status:1052: creating test/cdf_format/Makefile
config.status:1052: creating test/largefile/Makefile
config.status:1052: creating test/data/Makefile
config.status:1052: creating examples/C/Makefile
config.status:1052: creating examples/tutorial/Makefile
config.status:1052: creating examples/Makefile
config.status:1052: creating doc/Makefile
config.status:1052: creating man/Makefile
config.status:1052: creating scripts/Makefile
config.status:1052: creating benchmarks/Makefile
config.status:1052: creating benchmarks/C/Makefile
config.status:1052: creating test/nf_test/Makefile
config.status:1052: creating test/nf90_test/Makefile
config.status:1052: creating test/F90/Makefile
config.status:1052: creating examples/F77/Makefile
config.status:1052: creating examples/F90/Makefile
config.status:1052: creating src/libf90/Makefile
config.status:1052: creating src/libf90/api.f90
config.status:1052: creating src/libf90/nfmpi_constants.f90
config.status:1052: creating src/libf/Makefile
config.status:1052: creating src/libf/pnetcdf.inc
config.status:1052: creating src/libcxx/Makefile
config.status:1052: creating examples/CXX/Makefile
config.status:1052: creating test/CXX/Makefile
config.status:1052: creating benchmarks/FLASH-IO/Makefile
config.status:1052: creating test/subfile/Makefile
config.status:1052: creating src/lib/ncconfig.h
config.status:1052: creating src/libf/nfconfig_inc
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_NFMPI_OFFSET=yes
ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_c_bigendian=no
ac_cv_c_char_unsigned=no
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_ieeefloat=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_MPICC_set=set
ac_cv_env_MPICC_value=mpicc
ac_cv_env_MPICXX_set=set
ac_cv_env_MPICXX_value=mpicxx
ac_cv_env_MPIF77_set=set
ac_cv_env_MPIF77_value=mpif77
ac_cv_env_MPIF90_set=set
ac_cv_env_MPIF90_value=mpif90
ac_cv_env_RM_set=
ac_cv_env_RM_value=
ac_cv_env_TEST_MPIRUN_set=
ac_cv_env_TEST_MPIRUN_value=
ac_cv_env_TEST_OUTDIR_set=
ac_cv_env_TEST_OUTDIR_value=
ac_cv_env_TEST_SEQRUN_set=
ac_cv_env_TEST_SEQRUN_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=no
ac_cv_fc_compiler_gnu=no
ac_cv_fc_dummy_main=none
ac_cv_fc_fixedform=-fixed
ac_cv_fc_freeform=-FR
ac_cv_fc_libs=' -L/apps/mvapich2/2.1-intel/lib
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/debugger/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64
-L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64/
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/
-L/usr/lib64 -L/usr/lib -lmpifort -lmpi -lifport -lifcore -limf -lsvml -lm
-lipgo -lirc -lpthread -lirc_s -ldl'
ac_cv_fc_mangling='lower case, underscore, no extra underscore'
ac_cv_fc_module_ext=mod
ac_cv_fc_module_flag=-I
ac_cv_fc_module_output_flag='-mod '
ac_cv_fc_pp_define=-D
ac_cv_fc_pp_srcext_F90=none
ac_cv_fc_pp_srcext_F=none
ac_cv_fc_srcext_f90=none
ac_cv_fc_srcext_f=none
ac_cv_fortran_dummy_main=none
ac_cv_func_MPI_Comm_rank=yes
ac_cv_func_MPI_File_close=yes
ac_cv_func_MPI_File_open=yes
ac_cv_func_MPI_Get_address=yes
ac_cv_func_MPI_Info_dup=yes
ac_cv_func_MPI_Info_free=yes
ac_cv_func_MPI_Type_create_hindexed=yes
ac_cv_func_MPI_Type_create_hvector=yes
ac_cv_func_MPI_Type_create_resized=yes
ac_cv_func_MPI_Type_create_struct=yes
ac_cv_func_MPI_Type_create_subarray=yes
ac_cv_func_MPI_Type_get_extent=yes
ac_cv_func_access=yes
ac_cv_func_strerror=yes
ac_cv_func_tdelete=yes
ac_cv_func_tsearch=yes
ac_cv_func_unlink=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_search_h=yes
ac_cv_header_stdbool_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_m4_stdout=
ac_cv_objext=o
ac_cv_path_DVIPDF=/usr/bin/dvipdf
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_GREP=/bin/grep
ac_cv_path_LATEX=/usr/bin/latex
ac_cv_path_MPICC=/apps/mvapich2/2.1-intel/bin/mpicc
ac_cv_path_MPICXX=/apps/mvapich2/2.1-intel/bin/mpicxx
ac_cv_path_MPIF77=/apps/mvapich2/2.1-intel/bin/mpif77
ac_cv_path_MPIF90=/apps/mvapich2/2.1-intel/bin/mpif90
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AR=ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='/apps/mvapich2/2.1-intel/bin/mpicc -E'
ac_cv_prog_M4=m4
ac_cv_prog_NM=nm
ac_cv_prog_ac_ct_CC=/apps/mvapich2/2.1-intel/bin/mpicc
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_f90_uppercase_mod=no
ac_cv_prog_fc_g=yes
ac_cv_prog_fc_v=-v
ac_cv_prog_make_make_set=yes
ac_cv_sizeof_MPI_Aint=8
ac_cv_sizeof_MPI_Offset=8
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_int=4
ac_cv_sizeof_long=8
ac_cv_sizeof_long_long=8
ac_cv_sizeof_off_t=8
ac_cv_sizeof_short=2
ac_cv_sizeof_signed_char=1
ac_cv_sizeof_size_t=8
ac_cv_sizeof_uint=4
ac_cv_sizeof_unsigned_char=1
ac_cv_sizeof_unsigned_int=4
ac_cv_sizeof_unsigned_long_long=8
ac_cv_sizeof_unsigned_short=2
ac_cv_sizeof_ushort=2
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
ac_cv_type_MPI_Offset=yes
ac_cv_type__Bool=yes
ac_cv_type_longlong=no
ac_cv_type_off_t=yes
ac_cv_type_ptrdiff_t=yes
ac_cv_type_signal=void
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
ac_cv_type_uchar=no
ac_cv_type_uint=yes
ac_cv_type_ulonglong=no
ac_cv_type_ushort=yes
## ----------------- ##
## Output variables. ##
## ----------------- ##
AR='ar'
ARFLAGS='cru'
AWK='gawk'
BUILDDIR='/home/admin/software/pnetcdf/parallel-netcdf-1.6.1-intel-mvapich2'
CC='/apps/mvapich2/2.1-intel/bin/mpicc'
CC_MAKEDEPEND='false'
CFLAGS='-g -O2'
CONFIGURE_ARGS_CLEAN='--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2'
CPP='/apps/mvapich2/2.1-intel/bin/mpicc -E'
CPPFLAGS=''
CXX='/apps/mvapich2/2.1-intel/bin/mpicxx'
CXXCPPFLAGS=''
CXXFLAGS='-g -O2'
DEFS='-DHAVE_CONFIG_H'
DVIPDF='/usr/bin/dvipdf'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
F77='/apps/mvapich2/2.1-intel/bin/mpif77'
F90FLAGS='-g'
F90LDFLAGS=''
F90LIBS=''
FC='/apps/mvapich2/2.1-intel/bin/mpif90'
FCFLAGS='-g'
FCFLAGS_F90=''
FCFLAGS_F=''
FCFLAGS_f90=''
FCFLAGS_f=''
FCLIBS=' -L/apps/mvapich2/2.1-intel/lib
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/debugger/lib/intel64
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64
-L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/
-L/apps/intel/composer_xe_2015.3.187/mkl/lib/intel64/
-L/apps/intel/composer_xe_2015.3.187/compiler/lib/intel64/
-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/
-L/usr/lib64 -L/usr/lib -lmpifort -lmpi -lifport -lifcore -limf -lsvml -lm
-lipgo -lirc -lpthread -lirc_s -ldl'
FC_DEFINE='-D'
FC_MODEXT='mod'
FC_MODINC='-I'
FC_MODOUT='-mod ${ac_empty}'
FFIXEDFORMFLAG='-fixed'
FFLAGS='-g'
FFREEFORMFLAG='-FR'
FLDFLAGS=''
FLIBS=''
FPP=''
FPPFLAGS=''
GREP='/bin/grep'
INOUT='INOUT'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
LATEX='/usr/bin/latex'
LCOV_LIB=''
LDFLAGS=''
LIBOBJS=''
LIBS=''
LN_S='ln -s'
LTLIBOBJS=''
M4='m4'
M4FLAGS=''
MAKEWHATIS_CMD=''
MPICC='/apps/mvapich2/2.1-intel/bin/mpicc'
MPICXX='/apps/mvapich2/2.1-intel/bin/mpicxx'
MPIF77='/apps/mvapich2/2.1-intel/bin/mpif77'
MPIF90='/apps/mvapich2/2.1-intel/bin/mpif90'
NM='nm'
NMFLAGS=''
OBJEXT='o'
PACKAGE_BUGREPORT='parallel-netcdf at mcs.anl.gov'
PACKAGE_NAME='parallel-netcdf'
PACKAGE_STRING='parallel-netcdf 1.6.1'
PACKAGE_TARNAME='parallel-netcdf'
PACKAGE_URL=''
PACKAGE_VERSION='1.6.1'
PATH_SEPARATOR=':'
PNETCDF_INC='/home/admin/software/pnetcdf/parallel-netcdf-1.6.1-intel-mvapich2/src/libf90'
PNETCDF_LIB='-L/home/admin/software/pnetcdf/parallel-netcdf-1.6.1-intel-mvapich2/src/lib'
PNETCDF_RELEASE_DATE2='2015-06-01'
PNETCDF_RELEASE_DATE='01 Jun 2015'
PNETCDF_VERSION='1.6.1'
PNETCDF_VERSION_MAJOR='1'
PNETCDF_VERSION_MINOR='6'
PNETCDF_VERSION_PRE=''
PNETCDF_VERSION_SUB='1'
RANLIB='ranlib'
RM='rm'
SET_MAKE=''
SHELL='/bin/sh'
SIZEOF_MPI_OFFSET='8'
TEST_MPIRUN='mpiexec -n NP'
TEST_OUTDIR='.'
TEST_SEQRUN=''
UPPER_CASE_MOD='no'
WHATIS='whatis'
ac_ct_CC='/apps/mvapich2/2.1-intel/bin/mpicc'
ac_ct_CXX=''
ac_ct_F77=''
ac_ct_FC=''
ac_empty=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_subfiling='yes'
exec_prefix='${prefix}'
has_fortran='yes'
has_latex='yes'
has_mpicxx='yes'
have_yacc_lex='no'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
is_bigendian='no'
large_file_test='no'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/apps/pnetcdf/1.6.1-intel-mvapich2'
prog=''
program_transform_name='s,x,x,'
psdir='${docdir}'
rm_cmd=''
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "parallel-netcdf"
#define PACKAGE_TARNAME "parallel-netcdf"
#define PACKAGE_VERSION "1.6.1"
#define PACKAGE_STRING "parallel-netcdf 1.6.1"
#define PACKAGE_BUGREPORT "parallel-netcdf at mcs.anl.gov"
#define PACKAGE_URL ""
#define PNETCDF_VERSION_MAJOR 1
#define PNETCDF_VERSION_MINOR 6
#define PNETCDF_VERSION_SUB 1
#define PNETCDF_VERSION_PRE
#define PNETCDF_VERSION "1.6.1"
#define PNETCDF_RELEASE_DATE "01 Jun 2015"
#define CONFIGURE_ARGS_CLEAN "--prefix=/apps/pnetcdf/1.6.1-intel-mvapich2"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_MALLOC_H 1
#define F77_NAME_LOWER_USCORE /**/
#define HAVE__BOOL 1
#define HAVE_STDBOOL_H 1
#define HAVE_STRERROR 1
#define HAVE_ACCESS 1
#define HAVE_UNLINK 1
#define HAVE_SEARCH_H 1
#define HAVE_TSEARCH 1
#define HAVE_TDELETE 1
#define SIZEOF_MPI_OFFSET 8
#define SIZEOF_MPI_AINT 8
#define ENABLE_CDF5 /**/
#define ENABLE_NONBLOCKING /**/
#define HAVE_MPI_INFO_DUP 1
#define HAVE_MPI_INFO_FREE 1
#define HAVE_MPI_GET_ADDRESS 1
#define HAVE_MPI_TYPE_CREATE_SUBARRAY 1
#define HAVE_MPI_TYPE_CREATE_HVECTOR 1
#define HAVE_MPI_TYPE_CREATE_HINDEXED 1
#define HAVE_MPI_TYPE_CREATE_STRUCT 1
#define HAVE_MPI_TYPE_CREATE_RESIZED 1
#define HAVE_MPI_TYPE_GET_EXTENT 1
#define HAVE_MPI_COMBINER_DUP 1
#define HAVE_MPI_COMBINER_HVECTOR_INTEGER 1
#define HAVE_MPI_COMBINER_HINDEXED_INTEGER 1
#define HAVE_MPI_COMBINER_SUBARRAY 1
#define HAVE_MPI_COMBINER_DARRAY 1
#define HAVE_MPI_COMBINER_RESIZED 1
#define HAVE_MPI_COMBINER_STRUCT_INTEGER 1
#define HAVE_MPI_COMBINER_INDEXED_BLOCK 1
#define HAVE_MPI_COMBINER_F90_REAL 1
#define HAVE_MPI_COMBINER_F90_INTEGER 1
#define HAVE_MPI_COMBINER_F90_COMPLEX 1
#define HAVE_MPI_ERR_FILE_EXISTS 1
#define HAVE_MPI_ERR_NO_SUCH_FILE 1
#define HAVE_MPI_ERR_AMODE 1
#define HAVE_MPI_ERR_NOT_SAME 1
#define HAVE_MPI_ERR_BAD_FILE 1
#define HAVE_MPI_ERR_READ_ONLY 1
#define HAVE_MPI_ERR_ACCESS 1
#define HAVE_MPI_ERR_NO_SPACE 1
#define HAVE_MPI_ERR_QUOTA 1
#define HAVE_MPI_CHAR 1
#define HAVE_MPI_BYTE 1
#define HAVE_MPI_UNSIGNED_CHAR 1
#define HAVE_MPI_SHORT 1
#define HAVE_MPI_UNSIGNED_SHORT 1
#define HAVE_MPI_INT 1
#define HAVE_MPI_UNSIGNED 1
#define HAVE_MPI_LONG 1
#define HAVE_MPI_FLOAT 1
#define HAVE_MPI_DOUBLE 1
#define HAVE_MPI_LONG_LONG_INT 1
#define HAVE_MPI_UNSIGNED_LONG_LONG 1
#define HAVE_MPI_UB 1
#define HAVE_MPI_LB 1
#define HAVE_MPI_OFFSET_DATATYPE 1
#define HAVE_MPI_CHARACTER 1
#define HAVE_MPI_REAL 1
#define HAVE_MPI_INTEGER 1
#define HAVE_MPI_DOUBLE_PRECISION 1
#define HAVE_MPI_INTEGER1 1
#define HAVE_MPI_INTEGER2 1
#define HAVE_MPI_INTEGER4 1
#define HAVE_MPI_INTEGER8 1
#define HAVE_MPI_INTEGER16 1
#define HAVE_MPI_REAL4 1
#define HAVE_MPI_REAL8 1
#define HAVE_MPI_REAL16 1
#define HAVE_MPI_COMPLEX8 1
#define HAVE_MPI_COMPLEX16 1
#define HAVE_MPI_COMPLEX32 1
#define RETSIGTYPE void
#define HAVE_SSIZE_T 1
#define HAVE_PTRDIFF_T 1
#define HAVE_USHORT 1
#define HAVE_UINT 1
#define SIZEOF_SIZE_T 8
#define SIZEOF_OFF_T 8
#define SIZEOF_SIGNED_CHAR 1
#define SIZEOF_UNSIGNED_CHAR 1
#define SIZEOF_SHORT 2
#define SIZEOF_UNSIGNED_SHORT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED_INT 4
#define SIZEOF_LONG 8
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_LONG_LONG 8
#define SIZEOF_UNSIGNED_LONG_LONG 8
#define SIZEOF_USHORT 2
#define SIZEOF_UINT 4
#define NF_INT1_T integer*1
#define NF_INT2_T integer*2
#define NF_INT8_T integer*8
#define NF_INT1_IS_C_SIGNED_CHAR 1
#define NF_INT2_IS_C_SHORT 1
#define NF_INT8_IS_C_LONG 1
#define NF_INT_IS_C_INT 1
#define NF_REAL_IS_C_FLOAT 1
#define NF_DOUBLEPRECISION_IS_C_DOUBLE 1
#define NCBYTE_T byte
#define NCSHORT_T integer*2
#define ENABLE_SUBFILING 1
configure: exit 0
On Fri, Sep 18, 2015 at 4:15 PM, Wei-keng Liao <wkliao at eecs.northwestern.edu
> wrote:
> Hi, Craig
>
> Could you send us your config.log file?
>
> Wei-keng
>
> On Sep 18, 2015, at 4:57 PM, Craig Tierney - NOAA Affiliate wrote:
>
> > Hello,
> >
> > I am trying to build Pnetcdf 1.6.1 with Intel 15.0.3.048 and Mvapich2
> 2.1. I am getting some failures in the tests. I so far am getting 4
> failures. The flash-io test fails and the make process exits. When I
> build Pnetcdf 1.6.1 with Intel 15.0.3.048 and Intel MPI 5.1.1.109, all
> tests complete cleanly.
> >
> > Are there known issues with Pnetcdf 1.6.1 and Mvapich2 2.1?
> >
> > Thanks,
> > Craig
> >
> > ---------------
> > ./nc_test -d /lfs3/jetmgmt/Craig.Tierney
> >
> > FAILURE at line 112 of test_read.c: ncmpi_open of non-netCDF file:
> status = -220
> > ### 1 FAILURES TESTING test_ncmpi_open! Stop ... ###
> >
> > ./nc_test: expects 0 failures ... Total number of failures: 1
> > *** TESTING C ./nc_test for format CDF-1
> ------ failed
> >
> > --------------
> > And:
> >
> > -------------
> > *** TESTING C ./varn_int for ncmpi_put_varn_int_all()
> ------ pass
> > Error: expect error code -220 but got -51
> > Error: expect error code -220 but got -51
> > Error: expect error code -220 but got -51
> > Error: expect error code -220 but got -51
> > *** TESTING C ./modes for file create/open modes
> ------ failed
> > *** TESTING C ./one_record for only one record variable
> ------ pass
> >
> > ----------------
> >
> > Also:
> >
> > ---------------
> > Error at line=71: NetCDF: Not a valid ID
> > Error at line=72: NetCDF: Not a valid ID
> > Error at line=69: NetCDF: Not a valid ID
> > Error at line=71: NetCDF: Not a valid ID
> > Error at line=72: NetCDF: Not a valid ID
> > *** TESTING C ./wait_after_indep for ncmpi_end_indep_data
> ------ fail
> >
> > ----------
> > Lastly:
> >
> > make -w -C FLASH-IO ptest
> > make[2]: Entering directory
> `/misc/whome/admin/software/pnetcdf/parallel-netcdf-1.6.1-intel-mvapich2/benchmarks/FLASH-IO'
> > mpiexec.hydra -np 4 ./flash_benchmark_io
> /lfs3/jetmgmt/Craig.Tierney/flash_io_test_
> > nfmpi_enddef
> > (Internal error) beginning file offset of this variable is inconsistent
> among p
> > r
> > nfmpi_enddef
> > (Internal error) beginning file offset of this variable is inconsistent
> among p
> > r
> > nfmpi_enddef
> > (Internal error) beginning file offset of this variable is inconsistent
> among p
> > r
> > [cli_1]: aborting job:
> > application called MPI_Abort(MPI_COMM_WORLD, -1) - process 1
> > [cli_2]: aborting job:
> > application called MPI_Abort(MPI_COMM_WORLD, -1) - process 2
> > [cli_3]: aborting job:
> > application called MPI_Abort(MPI_COMM_WORLD, -1) - process 3
> >
> >
> ===================================================================================
> > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> > = PID 9284 RUNNING AT fe1
> > = EXIT CODE: 255
> > = CLEANING UP REMAINING PROCESSES
> > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> >
> ===================================================================================
> > make[2]: *** [ptest] Error 255
>
>
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