Configure error: with Intel MPI compilers.

[Dhirendra Kumar]

Dear Wei

Thanx for the reply. I ran the $CFLAGS command which displays the result-

-O3 -xHost -axSSE4.2 -fPIC

also I configured the parallel netcdf with the arguements suggested by you
as-
./configure MPICC=mpiicc MPICXX=mpiicpc MPIF77=mpiifort MPIF90=mpiifort
--prefix=$RLIB

and while running make, I am getting the following error-

/opt/intel/impi/4.1.0.024/intel64/bin/mpiicpc -c -O3 -xHost -axSSE4.2 -fPIC
-I. -I. -I../lib -DHAVE_CONFIG_H  ncmpiType.cpp
/opt/intel/impi/4.1.0.024/intel64/include/mpicxx.h(95): catastrophic error:
#error directive: "SEEK_SET is #defined but must not be for the C++ binding
of MPI. Include mpi.h before stdio.h"
  #error "SEEK_SET is #defined but must not be for the C++ binding of MPI.
Include mpi.h before stdio.h"

compilation aborted for ncmpiType.cpp (code 4)
make[2]: *** [ncmpiType.o] Error 4
make[2]: Leaving directory
`/home/dkumar/RLIB/parallel-netcdf-1.6.1/src/libcxx'
make[1]: *** [libcxx] Error 2
make[1]: Leaving directory `/home/dkumar/RLIB/parallel-netcdf-1.6.1/src'
make: *** [all] Error 2

I am attaching the config.log file for your reference....Please have a look.

Thanks

Sincerely
Dhirendra


On Tue, Jul 28, 2015 at 11:09 PM, Wei-keng Liao <
wkliao at eecs.northwestern.edu> wrote:

> Hi, Dhirendra
>
> Could you also run this command that shows the environment CFLAGS in your
> settings?
>
> echo $CFLAGS
>
>
> Wei-keng
>
> On Jul 28, 2015, at 6:43 AM, Dhirendra Kumar wrote:
>
> > Dear All,
> >
> > I am trying to compile parallel-netcdf-1.6.1 on a linux cluster. I have
> a preinstalled Intel MPI library and thus I have intel compilers wrapped as
> mpiicc, mpiicpc and mpiifort in the directory /opt/intel/impi/
> 4.1.0.024/intel64/bin-
> >
> > I have successfully installed the HDF5 library using the above compilers
> and I wish to build the netcdf-4.3.3.1 with parallel support. Before doing
> that as I came to know that I need to install the pnetcdf library so tried
> I with the following configure options-
> >
> > ./configure CC=mpiicc CXX=mpiicpc FC=mpiifort
> --prefix=/export/home/dkumar/RLIB
> CPPFLAGS=-I/export/home/dkumar/RLIB/include
> LDFLAGS=-L/export/home/dkumar/RLIB/lib
> >
> > and I am getting the following error:
> > checking for mpicc... /opt/intel/impi/4.1.0.024/intel64/bin/mpicc
> > checking for gcc... /opt/intel/impi/4.1.0.024/intel64/bin/mpicc
> > checking whether the C compiler works... no
> > configure: error: in `/home/dkumar/RLIB/parallel-netcdf-1.6.1':
> > configure: error: C compiler cannot create executables
> > See `config.log' for more details
> > configure: WARNING: cache variable ac_cv_env_FCFLAGS_value contains a
> newline
> >
> > I am not able to figure out what went wrong, but I think the configure
> script could not identify the mpicc (i.e. mpiicc is not being used for
> compiling).
> >
> > Any help would be appreciated. I am attaching the config.log file for
> the reference.
> >
> > Regards
> > Dhirendra Kumar
> >
> > --
> > ========================================
> > Dhirendra Kumar
> > UGC-JRF
> > School of Environmental Sciences, JNU
> > New Delhi (India)
> > Contact: +91 9910778043
> > Alternate email: dhirendra.cub at outlook.com
> > =========================================
> > <config.log>
>
>


-- 
========================================
Dhirendra Kumar
UGC-JRF
School of Environmental Sciences, JNU
New Delhi (India)
Contact: +91 9910778043
Alternate email: dhirendra.cub at outlook.com
=========================================
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