[mpich-discuss] mpiexec and working directory

[Jayesh Krishna]

 Hi,
  When you install MPICH2 make sure that you install the latest stable
version, 1.0.8. You could also ask your sysadmin to install MPICH2+smpd in
another directory  so that you can test MPICH2+smpd (1.0.8).

Regards,
Jayesh

-----Original Message-----
From: mpich-discuss-bounces at mcs.anl.gov
[mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of Tiago Silva
Sent: Friday, November 07, 2008 12:26 PM
To: mpich-discuss at mcs.anl.gov
Subject: Re: [mpich-discuss] mpiexec and working directory


So could that explain this behavior? I need to justify asking a very busy
sysadmin to get the daemons  on a 25 node cluster.

Tiago

Rajeev Thakur wrote:
> Oh, you are using SMPD. Can you try with the default MPD process
manager?
> You have to build MPICH2 again for that.
>
> Rajeev
>
>   
>> -----Original Message-----
>> From: mpich-discuss-bounces at mcs.anl.gov 
>> [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of Tiago Silva
>> Sent: Friday, November 07, 2008 12:18 PM
>> To: mpich-discuss at mcs.anl.gov
>> Subject: Re: [mpich-discuss] mpiexec and working directory
>>
>> Thanks Rajeev, this shows the problem nicely:
>>
>> [tsilva at admin1 work]$ /n1ge6/mpich2/smpd/bin/mpiexec -nopm -ssh -l -n 
>> 2 pwd /raid1/tsilva /raid1/tsilva
>> [tsilva at admin1 work]$ /n1ge6/mpich2/smpd/bin/mpiexec -nopm -ssh -l 
>> -wdir /tmp/ -n 2 pwd /raid1/tsilva /raid1/tsilva
>> [tsilva at admin1 work]$ ls runjob.err
>> runjob.err
>> [tsilva at admin1 work]$ /n1ge6/mpich2/smpd/bin/mpiexec -nopm -ssh -l 
>> -wdir /tmp/ -n 2 ls -l runjob.err
>> ls: runjob.err: No such file or directory
>> ls: runjob.err: No such file or directory
>>
>> Could this have anything to do with running mpiexec deamonless 
>> (although mpich was compiled with smpd)?
>> I noticed the same behavior with my regular setup of also deamonless 
>> mpirun and mpich1. Only after calling mpi_init in the code did the 
>> working dir change from being $home to the local dir.
>>
>> Cheers,
>> Tiago
>>
>> Rajeev Thakur wrote:
>>     
>>> Can you try these simple commands:
>>>
>>> mpiexec -l -n 2 pwd    
>>>   ## shows if you execute in the dir you think you are in
>>>
>>> mpiexec -l -wdir /tmp -n 2 pwd    
>>>   ## similar to above but shows you moved to /tmp
>>>
>>> mpiexec -l -n 2 ls -l some_filename    
>>>   ## shows if some expected file really is in the working dir
>>>
>>>  
>>>
>>>   
>>>       
>>>> -----Original Message-----
>>>> From: mpich-discuss-bounces at mcs.anl.gov 
>>>> [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of 
>>>> tsilva at coas.oregonstate.edu
>>>> Sent: Friday, November 07, 2008 1:26 AM
>>>> To: mpich-discuss at mcs.anl.gov
>>>> Subject: Re: [mpich-discuss] mpiexec and working directory
>>>>
>>>> Quoting Rajeev Thakur <thakur at mcs.anl.gov>:
>>>>
>>>>     
>>>>         
>>>>> If you cd to the directory containing the executable, say
>>>>>       
>>>>>           
>>>> a.out, and
>>>>     
>>>>         
>>>>> do "mpiexec -n 2 a.out" does it expect to find input
>>>>>           
>> files in your
>>     
>>>>> home directory? That's odd.
>>>>>       
>>>>>           
>>>> That is correct. I have tried another simpler code and the same 
>>>> thing happens.
>>>>
>>>>     
>>>>         
>>>>>> -----Original Message-----
>>>>>> From: mpich-discuss-bounces at mcs.anl.gov 
>>>>>> [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of
>>>>>>             
>> Tiago Silva
>>     
>>>>>> Sent: Thursday, November 06, 2008 6:02 PM
>>>>>> To: mpich-discuss at mcs.anl.gov
>>>>>> Subject: Re: [mpich-discuss] mpiexec and working directory
>>>>>>
>>>>>> Rajeev Thakur wrote:
>>>>>>         
>>>>>>             
>>>>>>> 1.0.3 is an ancient version of MPICH2. Try the latest
>>>>>>>           
>>>>>>>               
>>>>>> version, 1.0.8.
>>>>>>         
>>>>>> I will ask my systems administrator to do so.
>>>>>>
>>>>>>         
>>>>>>             
>>>>>>> The parameters to mpiexec are not identical between MPICH-1 and 
>>>>>>> MPICH2. Do mpiexec --help. Make sure you are calling
>>>>>>>           
>>>>>>>               
>>>>>> MPICH2's mpiexec, not MPICH-1's.
>>>>>>         
>>>>>> I am actually invoking mpiexec with its full path. Is there any 
>>>>>> incorrect parameter on my mpiexec call?
>>>>>> I
>>>>>>         
>>>>>>             
>>>>>>> If your input files are in the same directory as the
>>>>>>>           
>>>>>>>               
>>>>>> executable, you
>>>>>>         
>>>>>>             
>>>>>>> should not need to specify anything.
>>>>>>>
>>>>>>>           
>>>>>>>               
>>>>>> But that is exactly the problem. The executable can't find
>>>>>>         
>>>>>>             
>>>> the input
>>>>     
>>>>         
>>>>>> files on the working directory.
>>>>>>
>>>>>>
>>>>>>         
>>>>>>             
>>>>>       
>>>>>           
>>>>
>>>>     
>>>>         
>>>   
>>>       
>>     
>
>   

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