[MOAB-dev] Build failed in Jenkins: moab_par #668
jenkins-ci at mcs.anl.gov
jenkins-ci at mcs.anl.gov
Wed Oct 30 09:26:18 CDT 2013
See <https://jenkins-ci.mcs.anl.gov/job/moab_par/668/>
------------------------------------------
[...truncated 206 lines...]
checking for deflate in -lz... yes
checking for SZ_Decompress in -lsz... no
checking if HDF5 support is enabled... yes
checking hdf5.h usability... yes
checking hdf5.h presence... yes
checking for hdf5.h... yes
checking for gpfs_stat in -lgpfs... no
checking for H5Fopen in -lhdf5... no
checking for H5Fopen in -lhdf5... yes
checking for H5Pset_fapl_mpio in -lhdf5... yes
checking for H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS... yes
checking if CCMIO support is enabled... yes
checking if CCMIO support available...
checking ccmio.h usability... no
checking ccmio.h presence... no
checking for ccmio.h... no
checking ccmioutility.h usability... no
checking ccmioutility.h presence... no
checking for ccmioutility.h... no
checking ccmiocore.h usability... no
checking ccmiocore.h presence... no
checking for ccmiocore.h... no
checking unsuccessful, Ccmio support disabled...
checking if DAMSEL support is enabled... no
checking if DAMSEL support available...
checking if NetCDF support is enabled... yes
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
checking if NC_MAX_DIMS is at least 65536... no
checking if NC_MAX_VARS is at least 524288... no
checking for nc_create in -lnetcdf... yes
checking if Pnetcdf support is enabled... yes
checking pnetcdf.h usability... no
checking pnetcdf.h presence... no
checking for pnetcdf.h... no
checking for ncmpi_create in -lpnetcdf... no
checking for doxygen... /usr/bin/doxygen
checking if mbconvert is to be built... yes
checking if hexmodops is to be built... yes
checking if qvdual is to be built... no
checking if vtkMOABReader is to be built... no
checking if vtkMOABReaderNew is to be built... no
checking if mbsize is to be built... yes
checking if mbskin is to be built... yes
checking if mbtagprop is to be built... yes
checking if mbmem is to be built... yes
checking if mcnpmit is to be built... no
checking if mbcoupler is to be built... yes
checking if spheredecomp is to be built... yes
checking if mbsurfplot is to be built... yes
checking if mbzoltan is to be built... no
checking if dagmc is to be built... yes
checking if gsets is to be built... yes
checking if mbdepth is to be built... yes
checking if refiner is to be built... no
checking if h5mtools is to be built... yes
checking if mbcslam is to be built... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating moab.make
config.status: creating MOABConfig.cmake
config.status: creating src/Makefile
config.status: creating src/io/Makefile
config.status: creating src/io/mhdf/Makefile
config.status: creating src/LocalDiscretization/Makefile
config.status: creating src/parallel/Makefile
config.status: creating src/oldinc/Makefile
config.status: creating test/Makefile
config.status: creating test/h5file/Makefile
config.status: creating test/dual/Makefile
config.status: creating test/obb/Makefile
config.status: creating test/perf/Makefile
config.status: creating test/perf/point_location/Makefile
config.status: creating test/io/Makefile
config.status: creating test/parallel/Makefile
config.status: creating test/oldinc/Makefile
config.status: creating itaps/iBase_f.h
config.status: creating itaps/Makefile
config.status: creating itaps/imesh/Makefile
config.status: creating itaps/imesh/iMesh-Defs.inc
config.status: creating itaps/igeom/Makefile
config.status: creating itaps/igeom/FBiGeom-Defs.inc
config.status: creating tools/Makefile
config.status: creating tools/refiner/Makefile
config.status: creating tools/mbcoupler/Makefile
config.status: creating tools/mbcslam/Makefile
config.status: creating tools/mbzoltan/Config.moab
config.status: creating tools/mbzoltan/Makefile
config.status: creating tools/mcnpmit/Makefile
config.status: creating tools/qvdual/Makefile
config.status: creating tools/dagmc/Makefile
config.status: creating tools/vtkMOABReader/CMakeLists.txt
config.status: creating tools/vtkMOABReaderNew/CMakeLists.txt
config.status: creating doc/Makefile
config.status: creating doc/user.dox
config.status: creating doc/config.tex
config.status: creating MeshFiles/Makefile
config.status: creating MeshFiles/unittest/Makefile
config.status: creating MeshFiles/unittest/io/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: creating src/moab/Version.h
config.status: src/moab/Version.h is unchanged
config.status: creating src/moab/EntityHandle.hpp
config.status: src/moab/EntityHandle.hpp is unchanged
config.status: creating src/parallel/moab_mpi_config.h
config.status: src/parallel/moab_mpi_config.h is unchanged
config.status: creating src/FCDefs.h
config.status: src/FCDefs.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing src/MOAB_FCDefs.h commands
C: mpicc -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set
C++: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set
Fortran90: mpif90 -O2 -fcray-pointer
Fortran77: mpif77 -O2 -fcray-pointer
+ make
make all-recursive
make[1]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/'>
Making all in src
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src'>
(CDPATH="${ZSH_VERSION+.}:" && cd .. && /bin/sh <https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/config/missing> --run autoheader)
rm -f stamp-h5
touch FCDefs.h.in
cd .. && /bin/sh ./config.status src/FCDefs.h
config.status: creating src/FCDefs.h
config.status: src/FCDefs.h is unchanged
make all-recursive
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src'>
Making all in parallel
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/parallel'>
(CDPATH="${ZSH_VERSION+.}:" && cd ../.. && /bin/sh <https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/config/missing> --run autoheader)
rm -f stamp-h4
touch moab_mpi_config.h.in
cd ../.. && /bin/sh ./config.status src/parallel/moab_mpi_config.h
config.status: creating src/parallel/moab_mpi_config.h
config.status: src/parallel/moab_mpi_config.h is unchanged
make all-am
make[5]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/parallel'>
make[5]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/parallel'>
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/parallel'>
Making all in io
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/io'>
Making all in mhdf
make[5]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/io/mhdf'>
make[5]: Nothing to be done for `all'.
make[5]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/io/mhdf'>
Making all in .
make[5]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/io'>
make[5]: Nothing to be done for `all-am'.
make[5]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/io'>
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/io'>
Making all in LocalDiscretization
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/LocalDiscretization'>
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/LocalDiscretization'>
Making all in .
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src'>
/bin/sh ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -I./parallel -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT CN.lo -MD -MP -MF .deps/CN.Tpo -c -o CN.lo CN.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -I./parallel -DIS_BUILDING_MB -I. -I./io -I./io/mhdf/include -I./parallel -I./LocalDiscretization -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT CN.lo -MD -MP -MF .deps/CN.Tpo -c CN.cpp -o CN.o
mv -f .deps/CN.Tpo .deps/CN.Plo
/bin/sh ../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -o libMOAB.la -rpath /home/autotest/jenkins/moab/lib AdaptiveKDTree.lo AEntityFactory.lo AffineXform.lo AxisBox.lo BitPage.lo BitTag.lo BoundBox.lo BSPTree.lo BSPTreePoly.lo BVHTree.lo CN.lo CartVect.lo Core.lo DebugOutput.lo DenseTag.lo DualTool.lo EntitySequence.lo Factory.lo FBEngine.lo FileOptions.lo GeomUtil.lo GeomTopoTool.lo HigherOrderFactory.lo HomXform.lo MergeMesh.lo MeshSet.lo MeshSetSequence.lo MeshTag.lo MeshTopoUtil.lo OrientedBox.lo OrientedBoxTreeTool.lo poly.lo findpt.lo errmem.lo tensor.lo PolyElementSeq.lo ProgOptions.lo Range.lo RangeSeqIntersectIter.lo ReadUtil.lo ReaderWriterSet.lo ReorderTool.lo ScdElementData.lo ScdInterface.lo ScdVertexData.lo SequenceData.lo SequenceManager.lo SetIterator.lo Skinner.lo SmoothCurve.lo SmoothFace.lo SparseTag.lo SpatialLocator.lo SpectralMeshTool.lo StructuredElementSeq.lo SweptElementData.lo SweptElementSeq.lo SweptVertexData.lo SysUtil.lo TagInfo.lo Tree.lo Types.lo TypeSequenceManager.lo UnstructuredElemSeq.lo Util.lo VarLenDenseTag.lo VarLenSparseTag.lo VertexSequence.lo WriteUtil.lo parallel/libMOABpar.la io/libmoabio.la LocalDiscretization/libLocalDiscretization.la -lm
libtool: link: rm -fr .libs/libMOAB.a .libs/libMOAB.la .libs/libMOAB.lai
libtool: link: (cd .libs/libMOAB.lax/libMOABpar.a && ar x "<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/parallel/.libs/libMOABpar.a")>
libtool: link: (cd .libs/libMOAB.lax/libmoabio.a && ar x "<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/io/.libs/libmoabio.a")>
libtool: link: (cd .libs/libMOAB.lax/libLocalDiscretization.a && ar x "<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/LocalDiscretization/.libs/libLocalDiscretization.a")>
libtool: link: ar cru .libs/libMOAB.a AdaptiveKDTree.o AEntityFactory.o AffineXform.o AxisBox.o BitPage.o BitTag.o BoundBox.o BSPTree.o BSPTreePoly.o BVHTree.o CN.o CartVect.o Core.o DebugOutput.o DenseTag.o DualTool.o EntitySequence.o Factory.o FBEngine.o FileOptions.o GeomUtil.o GeomTopoTool.o HigherOrderFactory.o HomXform.o MergeMesh.o MeshSet.o MeshSetSequence.o MeshTag.o MeshTopoUtil.o OrientedBox.o OrientedBoxTreeTool.o poly.o findpt.o errmem.o tensor.o PolyElementSeq.o ProgOptions.o Range.o RangeSeqIntersectIter.o ReadUtil.o ReaderWriterSet.o ReorderTool.o ScdElementData.o ScdInterface.o ScdVertexData.o SequenceData.o SequenceManager.o SetIterator.o Skinner.o SmoothCurve.o SmoothFace.o SparseTag.o SpatialLocator.o SpectralMeshTool.o StructuredElementSeq.o SweptElementData.o SweptElementSeq.o SweptVertexData.o SysUtil.o TagInfo.o Tree.o Types.o TypeSequenceManager.o UnstructuredElemSeq.o Util.o VarLenDenseTag.o VarLenSparseTag.o VertexSequence.o WriteUtil.o .libs/libMOAB.lax/libMOABpar.a/ParallelComm.o .libs/libMOAB.lax/libMOABpar.a/ParallelData.o .libs/libMOAB.lax/libMOABpar.a/ParallelMergeMesh.o .libs/libMOAB.lax/libMOABpar.a/ProcConfig.o .libs/libMOAB.lax/libMOABpar.a/ReadParallel.o .libs/libMOAB.lax/libMOABpar.a/SharedSetData.o .libs/libMOAB.lax/libMOABpar.a/TupleList.o .libs/libMOAB.lax/libMOABpar.a/WriteHDF5Parallel.o .libs/libMOAB.lax/libMOABpar.a/gs.o .libs/libMOAB.lax/libmoabio.a/ExoIIUtil.o .libs/libMOAB.lax/libmoabio.a/FileTokenizer.o .libs/libMOAB.lax/libmoabio.a/GmshUtil.o .libs/libMOAB.lax/libmoabio.a/HDF5Common.o .libs/libMOAB.lax/libmoabio.a/IODebugTrack.o .libs/libMOAB.lax/libmoabio.a/NCHelper.o .libs/libMOAB.lax/libmoabio.a/NCHelperEuler.o .libs/libMOAB.lax/libmoabio.a/NCHelperFV.o .libs/libMOAB.lax/libmoabio.a/NCHelperHOMME.o .libs/libMOAB.lax/libmoabio.a/NCHelperMPAS.o .libs/libMOAB.lax/libmoabio.a/ReadABAQUS.o .libs/libMOAB.lax/libmoabio.a/ReadCGM.o .libs/libMOAB.lax/libmoabio.a/ReadGCRM.o .libs/libMOAB.lax/libmoabio.a/ReadGmsh.o .libs/libMOAB.lax/libmoabio.a/ReadHDF5.o .libs/libMOAB.lax/libmoabio.a/ReadHDF5Dataset.o .libs/libMOAB.lax/libmoabio.a/ReadHDF5VarLen.o .libs/libMOAB.lax/libmoabio.a/ReadIDEAS.o .libs/libMOAB.lax/libmoabio.a/ReadMCNP5.o .libs/libMOAB.lax/libmoabio.a/ReadNASTRAN.o .libs/libMOAB.lax/libmoabio.a/ReadNC.o .libs/libMOAB.lax/libmoabio.a/ReadNCDF.o .libs/libMOAB.lax/libmoabio.a/ReadSTL.o .libs/libMOAB.lax/libmoabio.a/ReadSmf.o .libs/libMOAB.lax/libmoabio.a/ReadSms.o .libs/libMOAB.lax/libmoabio.a/ReadTemplate.o .libs/libMOAB.lax/libmoabio.a/ReadTetGen.o .libs/libMOAB.lax/libmoabio.a/ReadTxt.o .libs/libMOAB.lax/libmoabio.a/ReadVtk.o .libs/libMOAB.lax/libmoabio.a/SMF_State.o .libs/libMOAB.lax/libmoabio.a/Tqdcfr.o .libs/libMOAB.lax/libmoabio.a/VtkUtil.o .libs/libMOAB.lax/libmoabio.a/WriteAns.o .libs/libMOAB.lax/libmoabio.a/WriteGMV.o .libs/libMOAB.lax/libmoabio.a/WriteGmsh.o .libs/libMOAB.lax/libmoabio.a/WriteHDF5.o .libs/libMOAB.lax/libmoabio.a/WriteNCDF.o .libs/libMOAB.lax/libmoabio.a/WriteSLAC.o .libs/libMOAB.lax/libmoabio.a/WriteSTL.o .libs/libMOAB.lax/libmoabio.a/WriteSmf.o .libs/libMOAB.lax/libmoabio.a/WriteTemplate.o .libs/libMOAB.lax/libmoabio.a/WriteVtk.o .libs/libMOAB.lax/libmoabio.a/adjacency.o .libs/libMOAB.lax/libmoabio.a/connectivity.o .libs/libMOAB.lax/libmoabio.a/file-desc.o .libs/libMOAB.lax/libmoabio.a/file-handle.o .libs/libMOAB.lax/libmoabio.a/file.o .libs/libMOAB.lax/libmoabio.a/nodes.o .libs/libMOAB.lax/libmoabio.a/sets.o .libs/libMOAB.lax/libmoabio.a/status.o .libs/libMOAB.lax/libmoabio.a/tags.o .libs/libMOAB.lax/libmoabio.a/util.o .libs/libMOAB.lax/libLocalDiscretization.a/ElemEvaluator.o .libs/libMOAB.lax/libLocalDiscretization.a/LinearHex.o .libs/libMOAB.lax/libLocalDiscretization.a/LinearQuad.o .libs/libMOAB.lax/libLocalDiscretization.a/LinearTet.o .libs/libMOAB.lax/libLocalDiscretization.a/QuadraticHex.o
libtool: link: ranlib .libs/libMOAB.a
libtool: link: rm -fr .libs/libMOAB.lax
libtool: link: ( cd ".libs" && rm -f "libMOAB.la" && ln -s "../libMOAB.la" "libMOAB.la" )
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src'>
Making all in oldinc
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/oldinc'>
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/oldinc'>
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src'>
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src'>
Making all in MeshFiles
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles'>
Making all in unittest
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles/unittest'>
Making all in io
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles/unittest/io'>
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles/unittest/io'>
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles/unittest'>
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles/unittest'>
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles/unittest'>
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles'>
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles'>
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/MeshFiles'>
Making all in itaps
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/itaps'>
Making all in imesh
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/itaps/imesh'>
make all-am
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/itaps/imesh'>
/bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../itaps -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT iMesh_MOAB.lo -MD -MP -MF .deps/iMesh_MOAB.Tpo -c -o iMesh_MOAB.lo iMesh_MOAB.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../itaps -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT iMesh_MOAB.lo -MD -MP -MF .deps/iMesh_MOAB.Tpo -c iMesh_MOAB.cpp -o iMesh_MOAB.o
mv -f .deps/iMesh_MOAB.Tpo .deps/iMesh_MOAB.Plo
/bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../itaps -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT iMeshP_MOAB.lo -MD -MP -MF .deps/iMeshP_MOAB.Tpo -c -o iMeshP_MOAB.lo iMeshP_MOAB.cpp
libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../itaps -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT iMeshP_MOAB.lo -MD -MP -MF .deps/iMeshP_MOAB.Tpo -c iMeshP_MOAB.cpp -o iMeshP_MOAB.o
mv -f .deps/iMeshP_MOAB.Tpo .deps/iMeshP_MOAB.Plo
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -o libiMesh.la -rpath /home/autotest/jenkins/moab/lib iMesh_MOAB.lo iMeshP_MOAB.lo ../../src/libMOAB.la -lm
libtool: link: rm -fr .libs/libiMesh.a .libs/libiMesh.la .libs/libiMesh.lai
libtool: link: ar cru .libs/libiMesh.a iMesh_MOAB.o iMeshP_MOAB.o
libtool: link: ranlib .libs/libiMesh.a
libtool: link: ( cd ".libs" && rm -f "libiMesh.la" && ln -s "../libiMesh.la" "libiMesh.la" )
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/itaps/imesh'>
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/itaps/imesh'>
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/itaps'>
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/itaps'>
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/itaps'>
Making all in tools
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/tools'>
Making all in .
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/tools'>
/bin/sh ../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -o mbconvert convert.o ../src/libMOAB.la ../itaps/imesh/libiMesh.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o mbconvert convert.o -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib ../src/.libs/libMOAB.a -L/home/autotest/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin -L./src/mpl -L./src/openpa/src ../itaps/imesh/.libs/libiMesh.a <https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/.libs/libMOAB.a> -lnetcdf /homes/jvporter/lib/libhdf5.a -lz /home/autotest/jenkins/cgm/lib/libcgm.a -lcubiti19 -lcubit_geom -lcubit_util /homes/fathom/3rdparty/mpich2/mpich2-1.5/gcc/lib/libmpichcxx.so /homes/fathom/3rdparty/mpich2/mpich2-1.5/gcc/lib/libmpich.so /homes/fathom/3rdparty/mpich2/mpich2-1.5/gcc/lib/libopa.so /homes/fathom/3rdparty/mpich2/mpich2-1.5/gcc/lib/libmpl.so /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/homes/fathom/3rdparty/mpich2/mpich2-1.5/gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/mpich2/mpich2-1.5/gcc/lib
/usr/bin/ld: warning: libgtcAttrib.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libCMLTet.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libcbtverdict.so.1.2, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: liblpsolve55.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtkfreetype.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtkNetCDF.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtksqlite.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtkexpat.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtkjpeg.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtkpng.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtktiff.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtkzlib.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libvtkNetCDF_cxx.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libmesquite.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: warning: libSpaACIS.so, needed by /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubiti19.so, not found (try using -rpath or -rpath-link)
/usr/bin/ld: mbconvert: hidden symbol `fstat' in /usr/lib/x86_64-linux-gnu/libc_nonshared.a(fstat.oS) is referenced by DSO
/usr/bin/ld: final link failed: Bad value
collect2: ld returned 1 exit status
make[3]: *** [mbconvert] Error 1
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/tools'>
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/tools'>
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab_par/ws/'>
make: *** [all] Error 2
Build step 'Execute shell' marked build as failure
More information about the moab-dev
mailing list