[MOAB-dev] buildbot failure in moab-cub-par-sha: failed test

[Iulian Grindeanu]

Hello, 
This error shows that we are linking against the previous installation, not against the latest built library, when we compile shared. Does anybody know a fix for this? 
It is hard to reproduce, as now, after installation, the current library is installed, so we will not see a link error anymore. 

Iulian 

" 
libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/structured3 structured3.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
/homes/fathom/install/cubpar/moab-sha/lib/libiMesh.so.0: undefined reference to `moab::ScdInterface::construct_box(moab::HomCoord, moab::HomCoord, double const*, unsigned int, moab::ScdBox*&, int*, moab::ScdParData*)'" 

----- Original Message -----

| Fathom : moab-cub-par-sha build #354
| Results: 	failed test
| Buildslave: 	gnep
| Revision: 	None Log Excerpt
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888:
| warning: unused parameter ‘keyval’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888:
| warning: unused parameter ‘ex’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884:
| warning: unused parameter ‘oldwin’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884:
| warning: unused parameter ‘keyval’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884:
| warning: unused parameter ‘ex’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884:
| warning: unused parameter ‘attr_in’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884:
| warning: unused parameter ‘attr_out’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1886:
| warning: unused parameter ‘win’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1886:
| warning: unused parameter ‘keyval’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1886:
| warning: unused parameter ‘attr’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1886:
| warning: unused parameter ‘ex’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888:
| warning: unused parameter ‘oldwin’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888:
| warning: unused parameter ‘keyval’
| /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888:
| warning: unused parameter ‘ex’
| parmerge.cpp:146: warning: unused parameter ‘numprocs’
| mv -f .deps/structured3.Tpo .deps/structured3.Po
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| uber_parallel_test uber_parallel_test.o ../../src/libMOAB.la -lm
| mv -f .deps/parmerge.Tpo .deps/parmerge.Po
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| scdtest scdtest.o ../../src/libMOAB.la -lm
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/uber_parallel_test uber_parallel_test.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/scdtest scdtest.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| pcomm_serial pcomm_serial.o ../../src/libMOAB.la -lm
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| scdpart scdpart.o ../../src/libMOAB.la -lm
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/pcomm_serial pcomm_serial.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/scdpart scdpart.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| read_nc_par read_nc.o ../../src/libMOAB.la -lm
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| ucdtrvpart ucdtrvpart.o ../../src/libMOAB.la -lm
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/read_nc_par read_nc.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/ucdtrvpart ucdtrvpart.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| mpastrvpart mpastrvpart.o ../../src/libMOAB.la -lm
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| parallel_hdf5_test parallel_hdf5_test.o ../../src/libMOAB.la -lm
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/mpastrvpart mpastrvpart.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/parallel_hdf5_test parallel_hdf5_test.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| /bin/sh ../../libtool  --tag=CC   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicc  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| mhdf_parallel mhdf_parallel.o ../../src/libMOAB.la -lm
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicc -Wall -pipe
| -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/mhdf_parallel mhdf_parallel.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| parallel_write_test parallel_write_test.o ../../src/libMOAB.la -lm
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| par_coupler_test par_coupler_test.o ../../src/libMOAB.la
| ../../tools/mbcoupler/libmbcoupler.la -lm
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/parallel_write_test parallel_write_test.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| mbparallelcomm_test mbparallelcomm_test.o ../../src/libMOAB.la -lm
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/par_coupler_test par_coupler_test.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so
| ../../tools/mbcoupler/.libs/libmbcoupler.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/mbparallelcomm_test mbparallelcomm_test.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| partcheck partcheck.o ../../src/libMOAB.la -lm
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/partcheck partcheck.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| structured3 structured3.o ../../src/libMOAB.la -lm
| /bin/sh ../../libtool  --tag=CXX   --mode=link
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -R/homes/fathom/install/cubpar/cgm-sha/lib
|  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
|     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
|  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
|  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
|  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o
| parmerge parmerge.o ../../src/libMOAB.la -lm
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/structured3 structured3.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| /homes/fathom/install/cubpar/moab-sha/lib/libiMesh.so.0: undefined
| reference to `moab::ScdInterface::construct_box(moab::HomCoord,
| moab::HomCoord, double const*, unsigned int, moab::ScdBox*&, int*,
| moab::ScdParData*)'
| collect2: ld returned 1 exit status
| ...make[4]: *** Waiting for unfinished jobs....
| libtool: link:
| /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall
| -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith
| -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG
| -o .libs/parmerge parmerge.o
|  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib
| -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib
| -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib
| -L/homes/fathom/install/cubpar/cgm-sha/lib
| -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
| ../../src/.libs/libMOAB.so -lm -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath
| -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
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