[MOAB-dev] buildbot failure in moab-cub-par-sha: failed test

[Tim Tautges]

structured3 is a code in test/parallel; it could be that that Makefile.am isn't looking in the non-install location for 
libraries, though I'd also say that's fairly unusual, since I thought libtool took care of putting that location on the 
search path.  Reproducing it probably requires getting rid of the lib dir and re-trying make check.

- tim

On 09/05/2013 09:51 AM, Iulian Grindeanu wrote:
> Hello,
> This error shows that we are linking against the previous installation, not against the latest built library, when we
> compile shared. Does anybody know a fix for this?
> It is hard to reproduce, as now, after installation, the current library is installed, so we will not see a link error
> anymore.
>
> Iulian
>
>
> "
>
> libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/structured3 structured3.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
> /homes/fathom/install/cubpar/moab-sha/lib/libiMesh.so.0: undefined reference to `moab::ScdInterface::construct_box(moab::HomCoord, moab::HomCoord, double const*, unsigned int, moab::ScdBox*&, int*, moab::ScdParData*)'"
>
>
> ------------------------------------------------------------------------------------------------------------------------
>
>
>       Fathom <http://gnep.mcs.anl.gov:8010/>: moab-cub-par-sha <http://gnep.mcs.anl.gov:8010/builders/moab-cub-par-sha>
>       build #354 <http://gnep.mcs.anl.gov:8010/builders/moab-cub-par-sha/builds/354>
>
>     *Results:*	failed test
>     *Buildslave:*	gnep
>     *Revision:*	None
>
>
>         Log Excerpt
>
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888: warning: unused parameter ‘keyval’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888: warning: unused parameter ‘ex’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884: warning: unused parameter ‘oldwin’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884: warning: unused parameter ‘keyval’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884: warning: unused parameter ‘ex’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884: warning: unused parameter ‘attr_in’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1884: warning: unused parameter ‘attr_out’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1886: warning: unused parameter ‘win’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1886: warning: unused parameter ‘keyval’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1886: warning: unused parameter ‘attr’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1886: warning: unused parameter ‘ex’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888: warning: unused parameter ‘oldwin’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888: warning: unused parameter ‘keyval’
>     /home/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/include/mpicxx.h:1888: warning: unused parameter ‘ex’
>     parmerge.cpp:146: warning: unused parameter ‘numprocs’
>     mv -f .deps/structured3.Tpo .deps/structured3.Po
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o uber_parallel_test uber_parallel_test.o ../../src/libMOAB.la -lm
>     mv -f .deps/parmerge.Tpo .deps/parmerge.Po
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o scdtest scdtest.o ../../src/libMOAB.la -lm
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/uber_parallel_test uber_parallel_test.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/scdtest scdtest.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o pcomm_serial pcomm_serial.o ../../src/libMOAB.la -lm
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o scdpart scdpart.o ../../src/libMOAB.la -lm
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/pcomm_serial pcomm_serial.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/scdpart scdpart.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o read_nc_par read_nc.o ../../src/libMOAB.la -lm
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o ucdtrvpart ucdtrvpart.o ../../src/libMOAB.la -lm
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/read_nc_par read_nc.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/ucdtrvpart ucdtrvpart.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o mpastrvpart mpastrvpart.o ../../src/libMOAB.la -lm
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o parallel_hdf5_test parallel_hdf5_test.o ../../src/libMOAB.la -lm
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/mpastrvpart mpastrvpart.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/parallel_hdf5_test parallel_hdf5_test.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     /bin/sh ../../libtool  --tag=CC   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicc  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o mhdf_parallel mhdf_parallel.o ../../src/libMOAB.la -lm
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicc -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/mhdf_parallel mhdf_parallel.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o parallel_write_test parallel_write_test.o ../../src/libMOAB.la -lm
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o par_coupler_test par_coupler_test.o ../../src/libMOAB.la ../../tools/mbcoupler/libmbcoupler.la -lm
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/parallel_write_test parallel_write_test.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o mbparallelcomm_test mbparallelcomm_test.o ../../src/libMOAB.la -lm
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/par_coupler_test par_coupler_test.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so ../../tools/mbcoupler/.libs/libmbcoupler.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/mbparallelcomm_test mbparallelcomm_test.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o partcheck partcheck.o ../../src/libMOAB.la -lm
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/partcheck partcheck.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o structured3 structured3.o ../../src/libMOAB.la -lm
>     /bin/sh ../../libtool  --tag=CXX   --mode=link /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/install/cubpar/cgm-sha/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib     -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib  -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib  -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -o parmerge parmerge.o ../../src/libMOAB.la -lm
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/structured3 structured3.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>     /homes/fathom/install/cubpar/moab-sha/lib/libiMesh.so.0: undefined reference to `moab::ScdInterface::construct_box(moab::HomCoord, moab::HomCoord, double const*, unsigned int, moab::ScdBox*&, int*, moab::ScdParData*)'
>     collect2: ld returned 1 exit status
>       ...make[4]: *** Waiting for unfinished jobs....
>     libtool: link: /homes/fathom/3rdparty/mpich2/mpich2-1.2.1/gcc/bin/mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o .libs/parmerge parmerge.o  -L/homes/fathom/3rdparty/netcdf/netcdf-4.0.1/parallel/gcc/lib -L/homes/fathom/3rdparty/zlib/zlib-1.2.4/gcc/lib -L/homes/fathom/3rdparty/hdf5/hdf5-1.8.3/parallel/gcc/lib -L/homes/fathom/install/cubpar/cgm-sha/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin ../../src/.libs/libMOAB.so -lm -Wl,-rpath -Wl,/homes/fathom/install/cubpar/moab-sha/lib -Wl,-rpath -Wl,/homes/fathom/install/cubpar/cgm-sha/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-12.2/bin
>
>

-- 
================================================================
"You will keep in perfect peace him whose mind is
   steadfast, because he trusts in you."               Isaiah 26:3

              Tim Tautges            Argonne National Laboratory
          (tautges at mcs.anl.gov)      (telecommuting from UW-Madison)
  phone (gvoice): (608) 354-1459      1500 Engineering Dr.
             fax: (608) 263-4499      Madison, WI 53706