[ExM Users] Installing Swift/T on Raven

Fri Apr 12 15:02:04 CDT 2013

Hi Justin,

For ADLB it doesn't recognize --with-mpi or --with-mpi-dir in the configure
file. So I pointed both flags to use the default:
./configure --prefix=/home/users/p01684/Public/sfw/lb CC=gcc
CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46/include
LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib -lmpich"
--with-c-utils=/home/users/p01684/Public/sfw/c-utils

I modified the Makefile and swapped gcc for two instances of mpicc.

I then installed SWIG from source with the configuration:
*

./configure --prefix=/home/users/p01684/Public/sfw/swig --without-pcre
*

I configure turbine with:

./configure --prefix=/home/users/p01684/Public/sfw/turbine
--with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46

However on "make package" there is an error with one of the blob header
files:
p01684 at raven:~/exm/turbine/trunk/code> make package SWIG
src/tcl/blob/SwiftBlob.i src/tcl/blob/blob.h:25: Warning 201: Unable to
find 'stdbool.h'

Do you know if there is a module I can load so swig can find the stdbool.h?

Thank you,
Scott

On Fri, Apr 12, 2013 at 1:44 PM, Justin M Wozniak <wozniak at mcs.anl.gov>wrote:

>
> That configure line points --prefix= ... /c-utils
>
> Also, CFLAGS=-I... should point to an include directory.
>
> Try setting
>
> --with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46
>
> and let me know what happens.  I will try to get on Raven soon to test
> this.
>
> On 04/12/2013 12:57 PM, Scott Krieder wrote:
>
>  Hi Justin,
>
> This is from a tarball from my machine where GeMTC and Swift are working,
> I haven't updated past version 6770. Sorry to bounce around with errors but
> I believe I had an earlier issue with the c-utils/adlb install that lead to
> this turbine issue. When configuring adlb I point it at the c-utils install
> and I get an error regarding the MPI version.
>
> I'm running:
> ./configure --prefix=/home/users/p01684/Public/c-utils CC=gcc
> --with-c-utils=/home/users/p01684/Public/sfw/c-utils
> CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46
> LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib -lmpich"
>
> I noticed that there are many folders in:
> /opt/cray/mpt/
>
> Is there a good way to identify which version I should use within
> /opt/cray/mpt? Or am I wrong in assuming that this versioning is what is
> causing the "Could not preprocess maint/mpi_version.cpp" error?
>
> Thanks,
> Scott
>
> ==error message==
> checking for cp that supports -u... yes
> using MPE: no
> checking for /home/users/p01684/Public/sfw/c-utils/include/c-utils.h... yes
> using ExM c-utils in /home/users/p01684/Public/sfw/c-utils ...
> checking MPI version... maint/mpi_version.cpp:23:17: error: mpi.h: No such
> file or directory
> configure: error: Could not preprocess maint/mpi_version.cpp
>
>
>
> On Fri, Apr 12, 2013 at 11:28 AM, Justin M Wozniak <wozniak at mcs.anl.gov>wrote:
>
>>  Hi
>>
>> Is this with trunk or with the release package?
>>
>> --with-mpi-dir may have been replaced by --with-mpi
>>
>>     Justin
>>
>>
>> On 04/12/2013 11:05 AM, Scott Krieder wrote:
>>
>>  Hi All,
>>
>>  I'm trying to install Swift/T on Raven. I followed the notes about Cray
>> systems.
>>
>>  When I configure turbine with:
>> ./configure --prefix=/home/users/p01684/Public/sfw/turbine
>> --enable-custom --with-mpi-dir=/opt/cray/mpt/default/xt/gemini/mpich2-gnu/46
>>
>>  I get a long error about "could not find directory" in reference to
>> mpicc. Is there something I should do in addition to the --with-mpi flag?
>>
>>  Thanks,
>> Scott
>>
>>  ==Error Message==
>>  checking for
>> /ufs/home/users/p01684/Public/sfw/c-utils/include/c-utils.h... yes
>> which: no mpicc in
>> (/opt/pbs/10.4.0.101257/bin:/opt/cray/atp/1.6.2/bin:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin:/opt/toolworks/totalview.8.11.0-1/bin:/opt/totalview-support/1.1.4/bin:/opt/cray/cce/8.1.4/cray-binutils/x86_64-unknown-linux-gnu/bin:/opt/cray/cce/8.1.4/craylibs/x86-64/bin:/opt/cray/cce/8.1.4/cftn/bin:/opt/cray/cce/8.1.4/CC/bin:/opt/cray/xt-asyncpe/5.20.11/bin:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin:/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/sbin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/bin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/sbin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/bin:/opt/cray/sdb/1.0-1.0401.38148.4.27.gem/bin:/opt/cray/nodestat/2.
>> 2-1.0401. 37252.2.1.gem /bin:/opt /modules/
>> 3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin
>> )
>>  ./configure: line 4032: ((: !  : syntax error: operand expected (error
>> token is " ")
>> checking for 0... no
>> configure: error: Could not find directory
>>
>>
>>  --
>> Scott J. Krieder
>>  C: 419-685-0410
>>  E: skrieder at iit.edu
>>  http://datasys.cs.iit.edu/~skrieder/
>>
>>
>> _______________________________________________
>> ExM-user mailing listExM-user at lists.mcs.anl.govhttps://lists.mcs.anl.gov/mailman/listinfo/exm-user
>>
>>
>>
>> --
>> Justin M Wozniak
>>
>>
>> _______________________________________________
>> ExM-user mailing list
>> ExM-user at lists.mcs.anl.gov
>> https://lists.mcs.anl.gov/mailman/listinfo/exm-user
>>
>>
>
>
>  --
> Scott J. Krieder
>  C: 419-685-0410
>  E: skrieder at iit.edu
>  http://datasys.cs.iit.edu/~skrieder/
>
>
>
> --
> Justin M Wozniak
>
>

-- 
Scott J. Krieder
C: 419-685-0410
E: skrieder at iit.edu
http://datasys.cs.iit.edu/~skrieder/
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