<div dir="ltr">Hi Justin,<div><div><br></div><div>For ADLB it doesn't recognize --with-mpi or --with-mpi-dir in the configure file. So I pointed both flags to use the default:<div>./configure --prefix=/home/users/p01684/Public/sfw/lb CC=gcc CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46/include LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib -lmpich" --with-c-utils=/home/users/p01684/Public/sfw/c-utils<br>
</div><div><br></div><div style>I modified the Makefile and swapped gcc for two instances of mpicc.</div><div><br></div></div><div style>I then installed SWIG from source with the configuration:</div><div style><b id="internal-source-marker_0.44373832386918366" style="color:rgb(0,0,0);font-family:Times;font-size:medium;font-weight:normal"><p dir="ltr" style="line-height:1.15;margin-top:0pt;margin-bottom:0pt">
<span style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">./configure --prefix=/home/users/p01684/Public/sfw/swig --without-pcre</span></p></b></div><div style>
<br></div><div style>I configure turbine with:</div><div style><span id="internal-source-marker_0.44373832386918366"><p dir="ltr" style="color:rgb(0,0,0);font-family:Times;font-size:medium;line-height:1.15;margin-top:0pt;margin-bottom:0pt">
<span style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">./configure --prefix=/home/users/p01684/Public/sfw/turbine --with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46</span></p>
<div style="color:rgb(0,0,0);font-family:Times;font-size:medium"><span style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br></span></div><div style="color:rgb(0,0,0);font-family:Times;font-size:medium">
<span style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap">However on "make package" there is an error with one of the blob header files:</span></div>
<div><span style="background-color:transparent;vertical-align:baseline"><font color="#000000" face="Arial"><span style="font-size:15px;white-space:pre-wrap">p01684@raven:~/exm/turbine/trunk/code> make package
SWIG src/tcl/blob/SwiftBlob.i
src/tcl/blob/blob.h:25: Warning 201: Unable to find 'stdbool.h'</span></font><br></span></div><div><span style="background-color:transparent;vertical-align:baseline"><font color="#000000" face="Arial"><span style="font-size:15px;white-space:pre-wrap"><br>
</span></font></span></div><div style><font color="#000000" face="Arial"><span style="font-size:15px;white-space:pre-wrap">Do you know if there is a module I can load so swig can find the stdbool.h?</span></font></div><div style>
<font color="#000000" face="Arial"><span style="font-size:15px;white-space:pre-wrap"><br></span></font></div><div style><font color="#000000" face="Arial"><span style="font-size:15px;white-space:pre-wrap">Thank you,</span></font></div>
<div style><font color="#000000" face="Arial"><span style="font-size:15px;white-space:pre-wrap">Scott</span></font></div><div style="color:rgb(0,0,0);font-family:Times;font-size:medium;font-weight:bold"><span style="font-size:15px;font-family:Arial;background-color:transparent;vertical-align:baseline;white-space:pre-wrap"><br>
</span></div></span></div>
</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Fri, Apr 12, 2013 at 1:44 PM, Justin M Wozniak <span dir="ltr"><<a href="mailto:wozniak@mcs.anl.gov" target="_blank">wozniak@mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
<div><br>
That configure line points --prefix= ... /c-utils <br>
<br>
Also, CFLAGS=-I... should point to an include directory. <br>
<br>
Try setting <br>
<br>
--with-mpi=/opt/cray/mpt/default/gni/mpich2-gnu/46<br>
<br>
and let me know what happens. I will try to get on Raven soon to
test this. <br><div><div class="h5">
<br>
On 04/12/2013 12:57 PM, Scott Krieder wrote:<br>
</div></div></div>
<blockquote type="cite"><div><div class="h5">
<div dir="ltr">
<div>
<div>Hi Justin,<br>
<br>
This is from a tarball from my machine where GeMTC and Swift
are working, I haven't updated past version 6770. Sorry to
bounce around with errors but I believe I had an earlier
issue with the c-utils/adlb install that lead to this
turbine issue. When configuring adlb I point it at the
c-utils install and I get an error regarding the MPI
version.<br>
<br>
I'm running:<br>
./configure --prefix=/home/users/p01684/Public/c-utils
CC=gcc --with-c-utils=/home/users/p01684/Public/sfw/c-utils
CFLAGS=-I/opt/cray/mpt/default/gni/mpich2-gnu/46
LDFLAGS="-L/opt/cray/mpt/default/gni/mpich2-gnu/46/lib
-lmpich"<br>
<br>
I noticed that there are many folders in:<br>
/opt/cray/mpt/<br>
<br>
Is there a good way to identify which version I should use
within /opt/cray/mpt? Or am I wrong in assuming that this
versioning is what is causing the "Could not preprocess
maint/mpi_version.cpp" error?</div>
<div><br>
Thanks,<br>
Scott<br>
<br>
==error message==<br>
checking for cp that supports -u... yes<br>
using MPE: no<br>
checking for
/home/users/p01684/Public/sfw/c-utils/include/c-utils.h...
yes</div>
<div>using ExM c-utils in
/home/users/p01684/Public/sfw/c-utils ...</div>
<div>checking MPI version... maint/mpi_version.cpp:23:17:
error: mpi.h: No such file or directory</div>
<div>configure: error: Could not preprocess
maint/mpi_version.cpp</div>
<div><br>
</div>
</div>
</div>
</div></div><div class="gmail_extra">
<br>
<br>
<div class="gmail_quote"><div><div class="h5">On Fri, Apr 12, 2013 at 11:28 AM,
Justin M Wozniak <span dir="ltr"><<a href="mailto:wozniak@mcs.anl.gov" target="_blank">wozniak@mcs.anl.gov</a>></span> wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000"><div><div class="h5">
<div>Hi<br>
<br>
Is this with trunk or with the release package? <br>
<br>
--with-mpi-dir may have been replaced by --with-mpi <br>
<br>
Justin
<div><br>
<br>
On 04/12/2013 11:05 AM, Scott Krieder wrote:<br>
</div>
</div>
</div></div><blockquote type="cite">
<div dir="ltr"><div><div class="h5">
<div>Hi All,
<div><br>
</div>
<div>I'm trying to install Swift/T on Raven. I
followed the notes about Cray systems.</div>
<div><br>
</div>
<div>When I configure turbine with:</div>
<div>./configure
--prefix=/home/users/p01684/Public/sfw/turbine
--enable-custom
--with-mpi-dir=/opt/cray/mpt/default/xt/gemini/mpich2-gnu/46<br>
</div>
<div><br>
</div>
<div>I get a long error about "could not find
directory" in reference to mpicc. Is there
something I should do in addition to the
--with-mpi flag?</div>
<div><br>
</div>
<div> Thanks,</div>
<div>Scott</div>
<div><br>
</div>
<div>==Error Message==</div>
</div>
</div></div><div>
<div>checking for
/ufs/home/users/p01684/Public/sfw/c-utils/include/c-utils.h...
yes</div>
<div>which: no mpicc in
(/opt/pbs/10.4.0.101257/bin:/opt/cray/atp/1.6.2/bin:/opt/cray/rca/1.0.0-2.0401.38656.2.2.gem/bin:/opt/cray/pmi/4.0.1-1.0000.9421.73.3.gem/bin:/opt/toolworks/totalview.8.11.0-1/bin:/opt/totalview-support/1.1.4/bin:/opt/cray/cce/8.1.4/cray-binutils/x86_64-unknown-linux-gnu/bin:/opt/cray/cce/8.1.4/craylibs/x86-64/bin:/opt/cray/cce/8.1.4/cftn/bin:/opt/cray/cce/8.1.4/CC/bin:/opt/cray/xt-asyncpe/5.20.11/bin:/opt/cray/llm/default/bin:/opt/cray/llm/default/etc:/opt/cray/xpmem/0.1-2.0401.36790.4.3.gem/bin:/opt/cray/dmapp/3.2.1-1.0401.5983.4.5.gem/bin:/opt/cray/ugni/4.0-1.0401.5928.9.5.gem/bin:/opt/cray/udreg/2.3.2-1.0401.5929.3.3.gem/bin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/sbin:/opt/cray/lustre-cray_gem_s/1.8.6_2.6.32.59_0.7.1_1.0401.6845.9.1-1.0401.38658.11.3/bin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/sbin:/opt/cray/MySQL/5.0.64-1.0000.5053.22.1/bin:/opt/cray/sdb/1.0-1.0401.38148.4.27.gem/bin:/opt/cray/nodestat/2.
2-1.0401.
37252.2.1.gem
/bin:/opt
/modules/<a href="http://3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin" target="_blank">3.2.6.7/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib64/jvm/jre/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:.:/usr/lib/qt3/bin:/opt/cray/bin</a>)</div>
<div class="im">
<div>
<div>./configure: line 4032: ((: ! : syntax
error: operand expected (error token is " ")</div>
<div>checking for 0... no</div>
<div>configure: error: Could not find directory</div>
</div>
</div></div><div class="im">
<div>
<div><br clear="all">
<div> <br>
</div>
-- <br>
<font face="Times" size="3">Scott J. Krieder<br>
</font>
<div>
<div><font face="Times" size="3">C: <a href="tel:419-685-0410" value="+14196850410" target="_blank">419-685-0410</a><br>
</font>
<div><font face="Times" size="3">E: <a href="mailto:skrieder@iit.edu" target="_blank">skrieder@iit.edu</a><br>
</font>
<div><font face="Times" size="3"><a href="http://datasys.cs.iit.edu/%7Eskrieder/" target="_blank">http://datasys.cs.iit.edu/~skrieder/</a></font></div>
</div>
</div>
</div>
</div>
</div>
</div></div><div class="im">
<br>
<fieldset></fieldset>
<br>
<pre>_______________________________________________
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<span><font color="#888888"> </font></span></div></blockquote>
<span><font color="#888888"> <br>
<br>
<pre cols="72">--
Justin M Wozniak
</pre>
</font></span></div><div class="im">
<br>
_______________________________________________<br>
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</div></blockquote>
</div><div class="im">
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<font face="Times" size="3">Scott J. Krieder<br>
</font>
<div>
<div><font face="Times" size="3">C: <a href="tel:419-685-0410" value="+14196850410" target="_blank">419-685-0410</a><br>
</font>
<div><font face="Times" size="3">E: <a href="mailto:skrieder@iit.edu" target="_blank">skrieder@iit.edu</a><br>
</font>
<div><font face="Times" size="3"><a href="http://datasys.cs.iit.edu/%7Eskrieder/" target="_blank">http://datasys.cs.iit.edu/~skrieder/</a></font></div>
</div>
</div>
</div>
</div></div><span class="HOEnZb"><font color="#888888">
</font></span></blockquote><span class="HOEnZb"><font color="#888888">
<br>
<br>
<pre cols="72">--
Justin M Wozniak
</pre>
</font></span></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><font face="Times" size="3">Scott J. Krieder<br></font><div><div><font face="Times" size="3">C: 419-685-0410<br></font><div><font face="Times" size="3">E: <a href="mailto:skrieder@iit.edu" target="_blank">skrieder@iit.edu</a><br>
</font><div><font face="Times" size="3"><a href="http://datasys.cs.iit.edu/~skrieder/" target="_blank">http://datasys.cs.iit.edu/~skrieder/</a></font></div></div></div></div>
</div>