[Swift-user] question about xsede

[Mihael Hategan]

Hi Justin,

Is there a queue named "normal" on that machine (qstat -q should tell
you)?

Mihael

On Sat, 2014-09-27 at 15:41 -0400, Justin bbt wrote:
> So, I am using this config
> 
> 
> <pool handle="black">
>     <execution provider="coaster" jobmanager="local:pbs" URL="none"/>
>     <profile namespace="env"    key="PATHPREFIX">{env.PWD}/../app</profile>
>     <profile namespace="globus" key="jobsPerNode">1</profile>
>     <profile namespace="globus" key="queue">normal</profile>
> <profile namespace="globus"  key="ppn">16</profile>
>   <profile namespace="globus" key="maxWallTime">00:01:00</profile>
>     <profile namespace="globus" key="maxTime">3600</profile>
>     <profile namespace="globus" key="lowOverAllocation">100</profile>
>     <profile namespace="globus" key="highOverAllocation">100</profile>
>     <profile namespace="globus" key="slots">2</profile>
>     <profile namespace="globus" key="maxNodes">1</profile>
>     <profile namespace="globus" key="nodeGranularity">1</profile>
>     <profile namespace="karajan" key="jobThrottle">.320</profile>
>     <profile namespace="karajan" key="initialScore">10000</profile>
>   <profile namespace="globus" key="slots">1</profile>
>    <profile namespace="globus"  key="project">TG-CCR134513</profile>
>     <workdirectory>/brashear/usrname</workdirectory>
>       <profile namespace="swift" key="stagingMethod">local</profile>
> <filesystem provider="local" />
> </pool>
> 
> but, it does not work and give this error :
> 
> Swift 0.95 RC6 swift-r7900 cog-r3908
> RunID: run011
> Warning: The @ syntax for function invocation is deprecated
> [Error] sites.xml, line 2, col 10: cvc-elt.1: Cannot find the declaration
> of element 'config'.
> Progress: Sat, 27 Sep 2014 15:35:52-0400
> 
> Could not submit job (qsub reported an exit code of 170).
> qsub: Unknown queue MSG=cannot locate queue
> 
> Execution failed:
> Exception in simulate:
>     Arguments: [--timesteps, 1, --range, 100, --nvalues, 5]
>     Host: black
>     Directory: p4-run011/jobs/s/simulate-sdm041yl
> exception @ swift-int-staging.k, line: 181
> Caused by:
> exception @ swift-int-staging.k, line: 177
> Caused by: Block task failed: Error submitting block task
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Could
> not submit job (qsub reported an exit code of 170).
> qsub: Unknown queue MSG=cannot locate queue
> 
> at
> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63)
> at
> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:45)
> at
> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:61)
> at
> org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:70)
> Caused by:
> org.globus.cog.abstraction.impl.scheduler.common.ProcessException: Could
> not submit job (qsub reported an exit code of 170).
> qsub: Unknown queue MSG=cannot locate queue
> 
> at
> org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:113)
> at
> org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)
> ... 3 more
> 
> 
> 
> also, in some configs I saw this. But I dont know what this is and what
> values should I set to
> 
>     <profile namespace="globus"
> key="providerAttributes">pbs.aprun;pbs.mpp;depth=32</profile>
> 
> 
> On Tue, Sep 23, 2014 at 6:22 PM, Justin bbt <justinbbt at gmail.com> wrote:
> 
> > Thank you very much.
> >
> > I am actually using the Blacklight, which I guess is PBS based.
> > So, should I use the Crays tutorial and setting ?
> > http://swift-lang.org/tutorials/cray/tutorial.html
> >
> > On Tue, Sep 23, 2014 at 10:31 AM, Ketan Maheshwari <ketan at mcs.anl.gov>
> > wrote:
> >
> >> Hi Justin,
> >>
> >> If you are using xsede Stampede regular nodes (non xeon phi), here is a
> >> site configuration that has worked for me in the past, connecting over ssh
> >> to slurm:
> >>
> >> <?xml version="1.0" encoding="UTF-8"?>
> >> <config xmlns="http://www.ci.uchicago.edu/swift/SwiftSites">
> >>  <pool handle="stampede">
> >>    <execution provider="coaster" jobmanager="ssh-cl:slurm" url="
> >> stampede.tacc.utexas.edu"/>
> >>    <filesystem provider="local" />
> >>    <profile namespace="globus"  key="jobsPerNode">1</profile>
> >>    <profile namespace="globus"  key="ppn">1</profile>
> >>    <profile namespace="globus"  key="maxTime">7500</profile>
> >>    <profile namespace="globus"  key="maxwalltime">00:10:00</profile>
> >>    <profile namespace="globus"  key="lowOverallocation">100</profile>
> >>    <profile namespace="globus"  key="highOverallocation">100</profile>
> >>    <profile namespace="globus"  key="queue">normal</profile>
> >>    <profile namespace="globus"  key="nodeGranularity">1</profile>
> >>    <profile namespace="globus"  key="maxNodes">1</profile>
> >>    <profile namespace="globus" key="slots">1</profile>
> >>    <profile namespace="globus"  key="project">TG-EAR130015</profile>
> >>    <profile namespace="karajan" key="jobThrottle">.3199</profile>
> >>    <profile namespace="karajan" key="initialScore">10000</profile>
> >>    <workdirectory>/tmp/{env.USER}/swift.work</workdirectory>
> >>   </pool>
> >> </config>
> >>
> >> You will need to replace project id with yours.
> >>
> >> Thanks,
> >> Ketan
> >>
> >> On Mon, Sep 22, 2014 at 8:32 PM, Justin bbt <justinbbt at gmail.com> wrote:
> >>
> >>> Hi
> >>>
> >>> If I want to use resources on the xsede
> >>> https://www.xsede.org/overview
> >>> which site config should I use ?
> >>>
> >>>
> >>> _______________________________________________
> >>> Swift-user mailing list
> >>> Swift-user at ci.uchicago.edu
> >>> https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user
> >>>
> >>
> >>
> >
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