[Swift-user] Block task failed on Tukey/Cobalt

[Mihael Hategan]

That's for PBS which is only marginally related to the Cobalt provider.

Mihael

On Tue, 2014-02-11 at 12:35 -0600, Ketan Maheshwari wrote:
> There is bug 1185 filed already:
> https://bugzilla.mcs.anl.gov/swift/show_bug.cgi?id=1185
> 
> 
> On Tue, Feb 11, 2014 at 11:23 AM, Justin M Wozniak <wozniak at mcs.anl.gov>wrote:
> 
> >
> > Let's add a bugzilla entry to make sure this error is reported clearly.
> >
> > On 02/11/2014 11:12 AM, Ketan Maheshwari wrote:
> >
> > This was fixed after changing the default project from the expired atpesc
> > to ExM.
> >
> >  Thanks!
> >
> >
> > On Tue, Feb 11, 2014 at 10:51 AM, David Kelly <davidkelly at uchicago.edu>wrote:
> >
> >>  The Cobalt provider submits jobs via the command line rather than a
> >> submit script, so I believe empty submit scripts are normal. From the log
> >> it looks like jobs are getting submitted and getting a job number. Are you
> >> running from a filesystem that is shared on worker nodes?
> >>
> >>
> >>  On Tue, Feb 11, 2014 at 10:12 AM, Ketan Maheshwari <ketan at mcs.anl.gov>wrote:
> >>
> >>> Swift Tutorial scripts worked on Tukey as of last August during the
> >>> ATPESC tutorials.
> >>>
> >>>  I find that empty Cobalt submit script files are created.
> >>>
> >>>
> >>> On Tue, Feb 11, 2014 at 9:27 AM, Justin M Wozniak <wozniak at mcs.anl.gov>wrote:
> >>>
> >>>>
> >>>> Has anyone else run successfully on Tukey?
> >>>>
> >>>> Can you inspect/post the Swift-generated Cobalt submit script? You may
> >>>> also want to inspect/post the Cobalt-generated
> >>>> *.submit.stdout/*.submit.stderr logs.
> >>>>
> >>>> On 02/10/2014 08:23 PM, Ketan Maheshwari wrote:
> >>>>
> >>>>  Hi,
> >>>>
> >>>>  Trying some Swift test for Swift-Galaxy demo on Tukey. Using
> >>>> local:cobalt coaster provider. I am getting the following error:
> >>>>
> >>>>  $ swift -sites.file sites.xml -tc.file tc -config cf script.swift
> >>>> Swift 0.94 swift-r6637 cog-r3742
> >>>>
> >>>>  RunID: 20140211-0216-ryo7slj7
> >>>> Progress:  time: Tue, 11 Feb 2014 02:16:53 +0000
> >>>> Progress:  time: Tue, 11 Feb 2014 02:17:23 +0000  Submitted:3
> >>>> Progress:  time: Tue, 11 Feb 2014 02:17:53 +0000  Submitted:3
> >>>> Progress:  time: Tue, 11 Feb 2014 02:17:58 +0000  Submitted:2  Active:1
> >>>> Execution failed:
> >>>>  Exception in sh:
> >>>>     Arguments:
> >>>> [gpfs/mira-home/ketan/galaxy-dist/database/files/000/dataset_1.dat, 0]
> >>>>     Host: tukey
> >>>>     Directory: script-20140211-0216-ryo7slj7/jobs/u/sh-uv25u9ml
> >>>> Caused by:
> >>>>  Block task failed:
> >>>>
> >>>>
> >>>>  anapp, script.swift, line 13
> >>>>
> >>>>  Tried many different options in swift.properties to no avail.
> >>>>
> >>>>  Also tried the ATPESC 2013 tutorial setup but scripts fail with same
> >>>> pattern/error messages.
> >>>>
> >>>>  Attaching the tarball with config, sites file.
> >>>>
> >>>>  Thanks for any suggestions.
> >>>>
> >>>>  Ketan
> >>>>
> >>>>
> >>>>   _______________________________________________
> >>>> Swift-user mailing listSwift-user at ci.uchicago.eduhttps://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user
> >>>>
> >>>>
> >>>>
> >>>> --
> >>>> Justin M Wozniak
> >>>>
> >>>>
> >>>> _______________________________________________
> >>>> Swift-user mailing list
> >>>> Swift-user at ci.uchicago.edu
> >>>> https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-user
> >>>>
> >>>
> >>>
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> >>>
> >>
> >>
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> >
> >
> >
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> >
> >
> > --
> > Justin M Wozniak
> >
> >
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