[Swift-user] Converting sites configuration

[Guilherme Gall]

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Em 04-04-2014 02:18, David Kelly escreveu:
> Hi Guilherme,
> 
> There was one setting (pe) that was undocumented and not yet in the
> new config. I've just added this and updated the user guide. I've
> attached a swift.properties file that I believe should work for you
> with the latest 0.95 and trunk. Please let me know if you have any
> issues.
> 
> I will add something to the user guide soon that makes it easier
> to translate settings directly from sites.xml to the new
> swift.properties format.
> 
> Thanks, David
> 
> 

Hi David,

The swift.properties that you sent me seems to work.

But now I'm having another problem that wasn't happening before.
Follows the error message that I receive sometimes:

- ----------
RunID: run011
Progress: Qui, 10 abr 2014 14:58:18-0300
Progress: Qui, 10 abr 2014 14:58:19-0300  Stage in:1
Progress: Qui, 10 abr 2014 14:58:20-0300  Active:1

Execution failed:
Exception in generate_requests:
    Arguments: [-o, teste.txt, --min_occurrences, 10, --map_list,
workshop/Brasil_ASC/alt.asc,workshop/Brasil_ASC/bio12.asc,workshop/Brasil_ASC/bio2.asc,
- -m, workshop/Brasil_ASC/bio9.asc, --output_format_file,
workshop/Brasil_ASC/bio10.asc, --output_map_list,
workshop/Brasil_ASC/alt.asc,workshop/Brasil_ASC/bio3.asc,
- --output_mask_file, workshop/Brasil_ASC/bio8.asc]
    Host: sunhpc
    Directory:
workflow-openmodeller-run011/jobs/b/generate_requests-b6u6c1pl
        exception @ swift-int.k, line: 520
Caused by: Failed to link input file workshop/Brasil_ASC/alt.asc
        throw @ swift-int.k, line: 68

        k:assign @ swift.k, line: 194
Caused by: Exception in generate_requests:
    Arguments: [-o, teste.txt, --min_occurrences, 10, --map_list,
workshop/Brasil_ASC/alt.asc,workshop/Brasil_ASC/bio12.asc,workshop/Brasil_ASC/bio2.asc,
- -m, workshop/Brasil_ASC/bio9.asc, --output_format_file,
workshop/Brasil_ASC/bio10.asc, --output_map_list,
workshop/Brasil_ASC/alt.asc,workshop/Brasil_ASC/bio3.asc,
- --output_mask_file, workshop/Brasil_ASC/bio8.asc]
    Host: sunhpc
    Directory:
workflow-openmodeller-run011/jobs/b/generate_requests-b6u6c1pl
        exception @ swift-int.k, line: 520
Caused by: Failed to link input file workshop/Brasil_ASC/alt.asc
        throw @ swift-int.k, line: 68

- ----------

This is happening in 2 different environments with Swift installed.
Both with recent code from trunk.  One of them is using revision 7758
and another 7759 (both from April 2014).

There is a third machine using Swift revision 7575 that works
perfectly. That was the environment that I used to develop my Swift
script[1]. It always worked fine there.

Is there the possibility of a recent change has generated a bug?

Best regasrds,

[1]
https://github.com/sibbr/sdm-workflows/blob/master/workflow-openmodeller.swift
- -- 
Guilherme Gall
CSR/LNCC
GPG Public Key ID: A65ED0D5
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