[Swift-user] swift returns error on pads

Zhao Zhang zhaozhang at uchicago.edu
Sun Feb 28 00:08:12 CST 2010 

Hi,

I have a following error message from swift when I ran it on pads with 
coaster. The swift
I am running is at
[zzhang at login2 final]$ which swift
/home/wilde/bigdata/swift/bin/swift

I am confused about the configuration settings in the sites.xml file. 
Could anybody point the
error in the settings? thanks.

Best
zhao

PS: I am pasting my pbs.xml and stdout from swift here.

[zzhang at login2 final]$ cat pbs.xml
<config>

  <pool handle="pbs">

    <profile namespace="globus" key="maxwalltime">00:00:10</profile>
    <profile namespace="globus" key="maxtime">1800</profile>

    <execution provider="coaster" url="none" jobManager="local:pbs"/>
    <profile namespace="globus" key="coastersPerNode">8</profile>

    <profile namespace="karajan" key="initialScore">10000</profile>
    <profile namespace="karajan" key="jobThrottle">.63</profile>

    <gridftp  url="local://localhost" />
    <workdirectory >/home/zzhang/swiftwork</workdirectory>

  </pool>



[zzhang at login2 final]$ time swift -tc.file ./tc sites.file ./pbs.xml 
movie.swift
Swift svn swift-r3255 (swift modified locally) cog-r2723

RunID: 20100228-0003-xeza2uh4
Progress:
Progress:Progress:  uninitialized:3  uninitialized:3

Progress:  Selecting site:936  Stage in:54  Submitting:1  Submitted:9
Progress:  Selecting site:936  Stage in:21  Submitted:43
Worker task failed: Error submitting block task
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: 
Cannot submit job: Could not submit job (qsub reported an exit code of 
188).
qsub: Job exceeds queue resource limits MSG=cannot locate feasible nodes

        at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63)
        at 
org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
        at 
org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)
        at 
org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:66)
Caused by: 
org.globus.cog.abstraction.impl.scheduler.common.ProcessException: Could 
not submit job (qsub reported an exit code of 188).
qsub: Job exceeds queue resource limits MSG=cannot locate feasible nodes

        at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:100)
        at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)
        ... 3 more
Progress:  Selecting site:936  Submitted:63  Active:1
Failed to transfer wrapper log from movie-20100228-0003-xeza2uh4/info/v 
on pbs
Execution failed:
        Exception in transform:
Arguments: [training_set_1000/mv_0001283.txt]
Host: pbs
Directory: movie-20100228-0003-xeza2uh4/jobs/v/transform-vt0goeoj
stderr.txt:

stdout.txt:

----

Caused by:
        Task failed: Error submitting block task
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: 
Cannot submit job: Could not submit job (qsub reported an exit code of 
188).
qsub: Job exceeds queue resource limits MSG=cannot locate feasible nodes

        at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:63)
        at 
org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
        at 
org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)
        at 
org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.run(BlockTaskSubmitter.java:66)
Caused by: 
org.globus.cog.abstraction.impl.scheduler.common.ProcessException: Could 
not submit job (qsub reported an exit code of 188).
qsub: Job exceeds queue resource limits MSG=cannot locate feasible nodes

        at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.start(AbstractExecutor.java:100)
        at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.submit(AbstractJobSubmissionTaskHandler.java:53)
        ... 3 more

Cleaning up...
Shutting down service at https://192.5.86.6:50002
Got channel MetaChannel: 2090567670 -> null
+Canceling job 5536.svc.pads.ci.uchicago.edu
Canceling job 5537.svc.pads.ci.uchicago.edu
Canceling job 5538.svc.pads.ci.uchicago.edu
Failed to shut down block
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Can 
only cancel an active task
        at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractExecutor.cancel(AbstractExecutor.java:177)
        at 
org.globus.cog.abstraction.impl.scheduler.common.AbstractJobSubmissionTaskHandler.cancel(AbstractJobSubmissionTaskHandler.java:85)
        at 
org.globus.cog.abstraction.impl.common.AbstractTaskHandler.cancel(AbstractTaskHandler.java:70)
        at 
org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:96)
        at 
org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.cancel(ExecutionTaskHandler.java:85)
        at 
org.globus.cog.abstraction.coaster.service.job.manager.BlockTaskSubmitter.cancel(BlockTaskSubmitter.java:44)
        at 
org.globus.cog.abstraction.coaster.service.job.manager.Block.forceShutdown(Block.java:271)
        at 
org.globus.cog.abstraction.coaster.service.job.manager.Block.shutdown(Block.java:252)
        at 
org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdownBlocks(BlockQueueProcessor.java:487)
        at 
org.globus.cog.abstraction.coaster.service.job.manager.BlockQueueProcessor.shutdown(BlockQueueProcessor.java:477)
        at 
org.globus.cog.abstraction.coaster.service.job.manager.JobQueue.shutdown(JobQueue.java:70)
        at 
org.globus.cog.abstraction.coaster.service.CoasterService.shutdown(CoasterService.java:211)
        at 
org.globus.cog.abstraction.coaster.service.ServiceShutdownHandler.requestComplete(ServiceShutdownHandler.java:28)
        at 
org.globus.cog.karajan.workflow.service.handlers.RequestHandler.receiveCompleted(RequestHandler.java:84)
        at 
org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.handleRequest(AbstractKarajanChannel.java:348)
        at 
org.globus.cog.karajan.workflow.service.channels.AbstractPipedChannel.sendTaggedData(AbstractPipedChannel.java:58)
        at 
org.globus.cog.karajan.workflow.service.channels.AbstractKarajanChannel.sendTaggedData(AbstractKarajanChannel.java:126)
        at 
org.globus.cog.karajan.workflow.service.commands.Command.send(Command.java:121)
        at 
org.globus.cog.karajan.workflow.service.commands.Command.send(Command.java:171)
        at 
org.globus.cog.karajan.workflow.service.commands.Command.executeAsync(Command.java:162)
        at 
org.globus.cog.abstraction.impl.execution.coaster.ServiceManager$ServiceReaper.run(ServiceManager.java:425)
 Done

real    0m14.073s
user    0m11.112s
sys     0m1.577s

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