[Swift-user] Montage wrapper error

[Mihael Hategan]

Ok. I'll need to take a look at these.

On Tue, 2010-08-03 at 23:15 -0500, Jonathan Monette wrote:
> with use.provider.staging=true i get
> Execution failed:
>      Exception in mProjectPP:
> Arguments: [-X, raw_dir/2mass-atlas-990214n-j1210091.fits, 
> proj_dir/proj_2mass-atlas-990214n-j1210091.fits, template.hdr]
> Host: teraport
> Directory: 
> m101_montage-20100803-2312-ex8oc5ff/jobs/y/mProjectPP-yt0gtrvjTODO: outs
> ----
> 
> Caused by:
>      Job failed with an exit code of 254
> 
> and with that line commented out i get a script printed to the screen 
> saying it doesn't know what #!/BIN?BASH
> 
> Execution failed:
>      Could not initialize shared directory on teraport
> Caused by:
>      org.globus.cog.abstraction.impl.file.FileResourceException: 
> org.globus.cog.karajan.workflow.service.ProtocolException: Unknown 
> command: #!/BIN/BASH
> 
> 
> On 8/3/10 11:04 PM, Mihael Hategan wrote:
> > Eh. I'll see if I can fix those.
> >
> > Though if you are using coasters, and given that I do think I fixed the
> > existing issues, there is one more thing you could try:
> > in swift.properties, at the end, say use.provider.staging=true
> >
> > Mihael
> >
> > On Tue, 2010-08-03 at 22:59 -0500, Jonathan Monette wrote:
> >    
> >> <pool handle="teraport">
> >> <execution provider="coaster" url="tp-login2.ci.uchicago.edu"
> >> jobmanager="ssh:pbs" />
> >> <filesystem provider="coaster" url="ssh://tp-login2.ci.uchicago.edu" />
> >> <profile namespace="globus" key="maxtime">3000</profile>
> >> <profile namespace="globus" key="workersPerNode">8</profile>
> >> <profile namespace="globus" key="slots">1</profile>
> >> <profile namespace="globus" key="nodeGranularity">1</profile>
> >> <profile namespace="globus" key="maxNodes">10</profile>
> >> <profile namespace="globus" key="queue">short</profile>
> >> <profile namespace="karajan" key="jobThrottle">0.7</profile>
> >> <profile namespace="karajan" key="initialScore">10000</profile>
> >> <filesystem provider="ssh" url="tp-login2.ci.uchicago.edu"/>
> >> <workdirectory>/home/jonmon/Library/swift/work/teraport</workdirectory>
> >> </pool>
> >>
> >> here is the new sites entry.  I tried running my code and got this error.
> >>
> >> class
> >> org.globus.cog.abstraction.impl.file.coaster.buffers.NIOChannelReadBuffer throws
> >> exception in doStuff. Fix it!
> >> java.lang.NullPointerException
> >>       at
> >> org.globus.cog.abstraction.impl.file.coaster.commands.PutFileCommand.dataRead(PutFileCommand.java:79)
> >>       at
> >> org.globus.cog.abstraction.impl.file.coaster.buffers.ReadBuffer.bufferRead(ReadBuffer.java:77)
> >>       at
> >> org.globus.cog.abstraction.impl.file.coaster.buffers.NIOChannelReadBuffer.doStuff(NIOChannelReadBuffer.java:36)
> >>       at
> >> org.globus.cog.abstraction.impl.file.coaster.buffers.Buffers.run(Buffers.java:122)
> >>
> >>
> >> On 8/3/10 10:55 PM, Mihael Hategan wrote:
> >>      
> >>> <filesystem provider="coaster" url="ssh://tp-login2.ci.uchicago.edu"  />
> >>>
> >>>        
> >>      
> >
> >    
>