[Swift-user] Montage wrapper error

[Jonathan Monette]

with use.provider.staging=true i get
Execution failed:
     Exception in mProjectPP:
Arguments: [-X, raw_dir/2mass-atlas-990214n-j1210091.fits, 
proj_dir/proj_2mass-atlas-990214n-j1210091.fits, template.hdr]
Host: teraport
Directory: 
m101_montage-20100803-2312-ex8oc5ff/jobs/y/mProjectPP-yt0gtrvjTODO: outs
----

Caused by:
     Job failed with an exit code of 254

and with that line commented out i get a script printed to the screen 
saying it doesn't know what #!/BIN?BASH

Execution failed:
     Could not initialize shared directory on teraport
Caused by:
     org.globus.cog.abstraction.impl.file.FileResourceException: 
org.globus.cog.karajan.workflow.service.ProtocolException: Unknown 
command: #!/BIN/BASH


On 8/3/10 11:04 PM, Mihael Hategan wrote:
> Eh. I'll see if I can fix those.
>
> Though if you are using coasters, and given that I do think I fixed the
> existing issues, there is one more thing you could try:
> in swift.properties, at the end, say use.provider.staging=true
>
> Mihael
>
> On Tue, 2010-08-03 at 22:59 -0500, Jonathan Monette wrote:
>    
>> <pool handle="teraport">
>> <execution provider="coaster" url="tp-login2.ci.uchicago.edu"
>> jobmanager="ssh:pbs" />
>> <filesystem provider="coaster" url="ssh://tp-login2.ci.uchicago.edu" />
>> <profile namespace="globus" key="maxtime">3000</profile>
>> <profile namespace="globus" key="workersPerNode">8</profile>
>> <profile namespace="globus" key="slots">1</profile>
>> <profile namespace="globus" key="nodeGranularity">1</profile>
>> <profile namespace="globus" key="maxNodes">10</profile>
>> <profile namespace="globus" key="queue">short</profile>
>> <profile namespace="karajan" key="jobThrottle">0.7</profile>
>> <profile namespace="karajan" key="initialScore">10000</profile>
>> <filesystem provider="ssh" url="tp-login2.ci.uchicago.edu"/>
>> <workdirectory>/home/jonmon/Library/swift/work/teraport</workdirectory>
>> </pool>
>>
>> here is the new sites entry.  I tried running my code and got this error.
>>
>> class
>> org.globus.cog.abstraction.impl.file.coaster.buffers.NIOChannelReadBuffer throws
>> exception in doStuff. Fix it!
>> java.lang.NullPointerException
>>       at
>> org.globus.cog.abstraction.impl.file.coaster.commands.PutFileCommand.dataRead(PutFileCommand.java:79)
>>       at
>> org.globus.cog.abstraction.impl.file.coaster.buffers.ReadBuffer.bufferRead(ReadBuffer.java:77)
>>       at
>> org.globus.cog.abstraction.impl.file.coaster.buffers.NIOChannelReadBuffer.doStuff(NIOChannelReadBuffer.java:36)
>>       at
>> org.globus.cog.abstraction.impl.file.coaster.buffers.Buffers.run(Buffers.java:122)
>>
>>
>> On 8/3/10 10:55 PM, Mihael Hategan wrote:
>>      
>>> <filesystem provider="coaster" url="ssh://tp-login2.ci.uchicago.edu"  />
>>>
>>>        
>>      
>
>    

-- 
Jon

Computers are incredibly fast, accurate, and stupid. Human beings are incredibly slow, inaccurate, and brilliant. Together they are powerful beyond imagination.
- Albert Einstein