[Swift-user] Montage wrapper error

[Jonathan Monette]

Ok.  Let me know if you need more of my input files or configurations.

On 8/3/10 11:20 PM, Mihael Hategan wrote:
> Ok. I'll need to take a look at these.
>
> On Tue, 2010-08-03 at 23:15 -0500, Jonathan Monette wrote:
>    
>> with use.provider.staging=true i get
>> Execution failed:
>>       Exception in mProjectPP:
>> Arguments: [-X, raw_dir/2mass-atlas-990214n-j1210091.fits,
>> proj_dir/proj_2mass-atlas-990214n-j1210091.fits, template.hdr]
>> Host: teraport
>> Directory:
>> m101_montage-20100803-2312-ex8oc5ff/jobs/y/mProjectPP-yt0gtrvjTODO: outs
>> ----
>>
>> Caused by:
>>       Job failed with an exit code of 254
>>
>> and with that line commented out i get a script printed to the screen
>> saying it doesn't know what #!/BIN?BASH
>>
>> Execution failed:
>>       Could not initialize shared directory on teraport
>> Caused by:
>>       org.globus.cog.abstraction.impl.file.FileResourceException:
>> org.globus.cog.karajan.workflow.service.ProtocolException: Unknown
>> command: #!/BIN/BASH
>>
>>
>> On 8/3/10 11:04 PM, Mihael Hategan wrote:
>>      
>>> Eh. I'll see if I can fix those.
>>>
>>> Though if you are using coasters, and given that I do think I fixed the
>>> existing issues, there is one more thing you could try:
>>> in swift.properties, at the end, say use.provider.staging=true
>>>
>>> Mihael
>>>
>>> On Tue, 2010-08-03 at 22:59 -0500, Jonathan Monette wrote:
>>>
>>>        
>>>> <pool handle="teraport">
>>>> <execution provider="coaster" url="tp-login2.ci.uchicago.edu"
>>>> jobmanager="ssh:pbs" />
>>>> <filesystem provider="coaster" url="ssh://tp-login2.ci.uchicago.edu" />
>>>> <profile namespace="globus" key="maxtime">3000</profile>
>>>> <profile namespace="globus" key="workersPerNode">8</profile>
>>>> <profile namespace="globus" key="slots">1</profile>
>>>> <profile namespace="globus" key="nodeGranularity">1</profile>
>>>> <profile namespace="globus" key="maxNodes">10</profile>
>>>> <profile namespace="globus" key="queue">short</profile>
>>>> <profile namespace="karajan" key="jobThrottle">0.7</profile>
>>>> <profile namespace="karajan" key="initialScore">10000</profile>
>>>> <filesystem provider="ssh" url="tp-login2.ci.uchicago.edu"/>
>>>> <workdirectory>/home/jonmon/Library/swift/work/teraport</workdirectory>
>>>> </pool>
>>>>
>>>> here is the new sites entry.  I tried running my code and got this error.
>>>>
>>>> class
>>>> org.globus.cog.abstraction.impl.file.coaster.buffers.NIOChannelReadBuffer throws
>>>> exception in doStuff. Fix it!
>>>> java.lang.NullPointerException
>>>>        at
>>>> org.globus.cog.abstraction.impl.file.coaster.commands.PutFileCommand.dataRead(PutFileCommand.java:79)
>>>>        at
>>>> org.globus.cog.abstraction.impl.file.coaster.buffers.ReadBuffer.bufferRead(ReadBuffer.java:77)
>>>>        at
>>>> org.globus.cog.abstraction.impl.file.coaster.buffers.NIOChannelReadBuffer.doStuff(NIOChannelReadBuffer.java:36)
>>>>        at
>>>> org.globus.cog.abstraction.impl.file.coaster.buffers.Buffers.run(Buffers.java:122)
>>>>
>>>>
>>>> On 8/3/10 10:55 PM, Mihael Hategan wrote:
>>>>
>>>>          
>>>>> <filesystem provider="coaster" url="ssh://tp-login2.ci.uchicago.edu"  />
>>>>>
>>>>>
>>>>>            
>>>>
>>>>          
>>>
>>>        
>>      
>
>    

-- 
Jon

Computers are incredibly fast, accurate, and stupid. Human beings are incredibly slow, inaccurate, and brilliant. Together they are powerful beyond imagination.
- Albert Einstein