[Swift-user] RAxML error msgs

[Mihael Hategan]

Make sure you set GLOBUS_HOSTNAME=172.17.3.16 before starting swift and
that you have <profile namespace="globus"
key="alcfbgpnat">true</profile> in sites.xml.

Mihael

On Thu, 2009-11-12 at 16:12 -0800, Fangfang Xia wrote:
> Hi,
> 
> I am trying to run RAxML with Swift on Surveyor and am getting the
> following error mesages. Could you help me with  this? Thanks.
> 
> directory:
> ~fangfang/work/jgi/phylo/test.raxml/
> 
> command line:
> swift -tc.file tc.data -sites.file sites.xml raxmlex1.swift
> 
> 
> Failed to transfer wrapper log from
> raxmlex1-20091112-1726-ct8vv8tf/info/m on surveyor
> Progress:  Submitted:7
> 
> Failed to connect: Connection timed out at
> /home/fangfang/.globus/coasters/cscript7914625247065953287.pl line
> 129.
> Failed to connect: Connection timed out at
> /home/fangfang/.globus/coasters/cscript7914625247065953287.pl line
> 129.
> Failed to connect: Connection timed out at
> /home/fangfang/.globus/coasters/cscript7914625247065953287.pl line
> 129.
> 
> Progress:  Submitted:6  Active:1
> Failed to transfer wrapper log from
> raxmlex1-20091112-1726-ct8vv8tf/info/p on surveyor
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Progress:  Submitted:7
> Worker task failed: 1112-260539-000002Block task ended prematurely
> 
> Statement unlikely to be reached at
> /home/fangfang/.globus/coasters/cscript7914625247065953287.pl line
> 592.
>         (Maybe you meant system() when you said exec()?)
> Statement unlikely to be reached at
> /home/fangfang/.globus/coasters/cscript7914625247065953287.pl line
> 592.
>         (Maybe you meant system() when you said exec()?)
> Statement unlikely to be reached at
> /home/fangfang/.globus/coasters/cscript7914625247065953287.pl line
> 592.
>         (Maybe you meant system() when you said exec()?)
> Statement unlikely to be reached at
> /home/fangfang/.globus/coasters/cscript7914625247065953287.pl line
> 592.
> 
> ...
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