[Swift-user] Teragrid execution problem

[Michael Wilde]

Yuechecn, I think your pathnames to globus-url-copy are not correct, but 
I dont *think* thats causing this problem: there is likely a problem on 
abe with the mapping of your certs.  I'll take a look.  (OK, I see Ben 
you are looking into it, will wait, but let me know if I should help Yue)

But, also fix the pathnames. In:

globus-url-copy file:///fasta334
                 gsiftp://gridftp-abe.ncsa.teragrid.org:2811/yuechen/tmp

these should be:

file:///home/yuechen/whateverdirs/fasta334

and similarly, whatever is after
gsiftp://gridftp-abe.ncsa.teragrid.org:2811/

should be a valid full path name on abe.  (eg, 
/home/users/something/yuechen/tmp - whatever the directory structure is 
on abe.

On 3/20/09 2:53 PM, Yue, Chen - BMD wrote:
> Hi Ben,
>  
> Thanks for answering my question. I tried the following command:
>  
> [yuechen at communicado PTMap]$ globus-url-copy file:///fasta334 
> gsiftp://gridftp-abe.ncsa.teragrid.org:2811/yuechen/tmp
> GlobusUrlCopy error: UrlCopy transfer failed. [Caused by: Server refused 
> performing the request. Custom message: Bad password. (error code 1) 
> [Nested exception message:  Custom message: Unexpected reply: 530-Login 
> incorrect. : globus_gss_assist: Gridmap lookup failure: Could not map 
> /DC=org/DC=doegrids/OU=People/CN=Yue Chen 509341
> 530-
> 530 End.]]
> But I don't understand why it may fail, since I have performed 
> grid-proxy-init and gx-request commands. Is it because the ftp server 
> too busy?
>  
> I also tried SDSC clusters, but I got different error message. Is this 
> also because of gsiftp issue?
>  
> sites.xml ---
>  
>  <pool handle="SDSC_dtf_prews_pbs">
>    <gridftp  url="gsiftp://tg-gridftp.sdsc.teragrid.org:2811/" />
>    <jobmanager universe="vanilla" 
> url="tg-login1.sdsc.teragrid.org:2119/jobmanager-pbs" major="2" />
>    <workdirectory >/gpfs-wan/scratch/yuechen</workdirectory>
>    <profile namespace="globus" key="queue">fast</profile>
>  </pool>
> tc.data ---
>  
> SDSC_dtf_prews_pbs     PTMap   /home/yuechen/PTMap/PTMap       
> INSTALLED       INTEL32::LINUX  null 
>  
> Error messages and globus-job-run test:
>  
> [yuechen at communicado PTMap]$ swift PTMap-unmod.swift -sites.file 
> sites.xml -tc.file tc.data
> Swift 0.8 swift-r2448 cog-r2261
> RunID: 20090320-1433-oc8ufsv3
> Progress:
> Progress:  Selecting site:9 Stage in:1 Initializing site shared directory:1
> Progress:  Selecting site:9 Stage in:2
> Progress:  Selecting site:9 Stage in:2
> Progress:  Selecting site:9 Stage in:2
> Progress:  Selecting site:9 Stage in:2
> Progress:  Selecting site:9 Stage in:1 Submitting:1
> Progress:  Selecting site:9 Submitting:2
> Failed to transfer wrapper log from 
> PTMap-unmod-20090320-1433-oc8ufsv3/info/8 on SDSC_dtf_prews_pbs
> Progress:  Selecting site:8 Stage in:1 Submitting:1 Failed but can retry:1
> Progress:  Selecting site:8 Submitting:1 Submitted:1 Failed but can retry:1
> Failed to transfer wrapper log from 
> PTMap-unmod-20090320-1433-oc8ufsv3/info/9 on SDSC_dtf_prews_pbs
> Progress:  Selecting site:7 Stage in:1 Submitting:1 Failed but can retry:2
> Progress:  Selecting site:7 Submitting:1 Submitted:1 Failed but can retry:2
> Failed to transfer wrapper log from 
> PTMap-unmod-20090320-1433-oc8ufsv3/info/d on SDSC_dtf_prews_pbs
> Progress:  Selecting site:7 Submitted:1 Failed but can retry:3
> Failed to transfer wrapper log from 
> PTMap-unmod-20090320-1433-oc8ufsv3/info/b on SDSC_dtf_prews_pbs
> Progress:  Selecting site:7 Failed but can retry:4
> Progress:  Selecting site:7 Failed but can retry:4
> Progress:  Selecting site:6 Stage in:1 Failed but can retry:4
> Progress:  Selecting site:6 Submitting:1 Failed but can retry:4
> Progress:  Selecting site:6 Submitted:1 Failed but can retry:4
> Failed to transfer wrapper log from 
> PTMap-unmod-20090320-1433-oc8ufsv3/info/g on SDSC_dtf_prews_pbs
> Progress:  Selecting site:6 Failed but can retry:5
> [yuechen at communicado PTMap]$ globus-job-run tg-login1.sdsc.teragrid.org 
> /usr/bin/id
> uid=502857(yuechen) gid=5195(anl100) groups=5195(anl100)
> 
> ------------------------------------------------------------------------
> *From:* Ben Clifford [mailto:benc at hawaga.org.uk]
> *Sent:* Fri 3/20/2009 1:14 PM
> *To:* Yue, Chen - BMD
> *Cc:* swift user
> *Subject:* Re: [Swift-user] Teragrid execution problem
> 
> 
> That is an error coming from the gridftp server.
> 
> Check that you van reliably (sveral times) use globus-url-copy to copy
> files from the gridftp server that you specify in the sites file:
> 
> gsiftp://gridftp-abe.ncsa.teragrid.org:2811
> 
> 
> ------------------------------------------------------------------------
> *From:* Ben Clifford [mailto:benc at hawaga.org.uk]
> *Sent:* Fri 3/20/2009 1:14 PM
> *To:* Yue, Chen - BMD
> *Cc:* swift user
> *Subject:* Re: [Swift-user] Teragrid execution problem
> 
> 
> That is an error coming from the gridftp server.
> 
> Check that you van reliably (sveral times) use globus-url-copy to copy
> files from the gridftp server that you specify in the sites file:
> 
> gsiftp://gridftp-abe.ncsa.teragrid.org:2811
> 
>  
> 
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