[Swift-user] Running on Teraport

[Glen Hocky]

You have to change your environment until typing "qstat" on the command line
works.
I'm guessing if you edit $HOME/.soft and put in the line

+torque

and then type

resoft;source ~/.bashrc

you'll be good to go

On Mon, Jun 22, 2009 at 2:14 PM, Alex Moore <amoore2 at uchicago.edu> wrote:

> I'm running swift on tp-login.ci.uchicago.edu, and I want to run it on
> the cluster. I changed my swiftwork dir as Glen suggested so I now
> have:
>
> pool handle="localhost" >
>   <gridftp url="local://localhost" />
>   <execution provider="pbs" url="none"/>
>    <workdirectory>/home/amoore2/Work</workdirectory>
>    <profile namespace="karajan" key="jobThrottle">0</profile>
>  </pool>
>
> localhost   wormanalysis    /home/amoore2/work/run_wormanalysis.sh
> INSTALLED    INTEL32::LINUX null
>
> as my sites.xml and tc.dat files. I get the same error message:
>
> Caused by:
> Cannot submit job: java.io.IOException: qsub: not found
>
> It also says that it "Failed to transfer wrapper log from
> wormanalysis-......../info/9 on localhost" when I run the program
>
> -Alex
>
> On Mon, Jun 22, 2009 at 1:26 PM, Glen Hocky<hockyg at uchicago.edu> wrote:
> > <pool handle="teraport" >
> >   <profile namespace="globus" key="queue">fast</profile>
> >   <profile namespace="globus" key="maxwalltime">01:00:00</profile>
> >   <gridftp url="local://localhost" />
> >   <execution provider="pbs" url="none" jobmanager="local:pbs" />
> >   <workdirectory>/home/hockyg/swiftwork</workdirectory>
> > </pool>
> >
> > change swiftwork dir
> >
> > On Mon, Jun 22, 2009 at 1:10 PM, Alex Moore <amoore2 at uchicago.edu>
> wrote:
> >>
> >> Thanks, that got it running. I get a different error message now though:
> >>
> >> Execution failed:
> >> Exception in wormanalysis
> >> Arguments: [home/amoore2/Work/Data/070326.tif,
> >> home/amoore2/Work/Save/Ang-Def.0006.dat,
> >> home/amoore2/Work/Save/Props.0006.dat]
> >> Host: localhost
> >> Directory:
> >> wormanalysis-20090622-1303-7z3h1d62/jobs/0/wormanalysis-0mumlmcj
> >> stderr.txt
> >>
> >> stdout.txt
> >>
> >> ----
> >> Caused by:
> >> Cannot submit job: java.io.IOException: qsub: not found
> >>
> >> The program loads an image file from my CI account as input and
> >> outputs two .dat files to a directory on my CI account as well- I
> >> don't know if it might be something in my code that is causing this.
> >> Thanks.
> >> -Alex
> >>
> >> On Mon, Jun 22, 2009 at 12:54 PM, Zhao Zhang<zhaozhang at uchicago.edu>
> >> wrote:
> >> > Hi, Alex
> >> >
> >> > # sitename   transformation   path   INSTALLED    platform    profiles
> >> > pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
> >> > INSTALLED    INTEL32::LINUX null
> >> >
> >> > change the "pbs" above to localhost.
> >> > That "sitename" field should be the same as the <pool handle> in
> >> > sites.xml
> >> >
> >> > best
> >> > zhao
> >> >
> >> >
> >> > Alex Moore wrote:
> >> >>
> >> >> Trying to run a job on Teraport. Logged into
> tp-login.ci.uchicago.edu.
> >> >> Use the following entries for sites.xml and tc.dat:
> >> >> ------
> >> >>  <pool handle="localhost">
> >> >>    <gridftp  url="local://localhost" />
> >> >>    <execution provider="pbs" url="none" />
> >> >>    <workdirectory >/var/tmp</workdirectory>
> >> >>    <profile namespace="karajan" key="jobThrottle">0</profile>
> >> >>  </pool>
> >> >> ----------
> >> >> # sitename   transformation   path   INSTALLED    platform
>  profiles
> >> >> pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
> >> >> INSTALLED    INTEL32::LINUX null
> >> >> ----------
> >> >>
> >> >> My swift program call an app named wormanalysis that is on my ci
> >> >> account. Runs fine locally. Mike Wilde said that changing the
> >> >> "<execution provider="  to pbs instead of localhost should work. Got
> >> >> the following error message:
> >> >>
> >> >> Execution failed:
> >> >> Could no find any valid host for the task "Task( type=UNKNOWN,
> >> >> identity=urn:cog-1245692325277)" with constraints {filenames=
> >> >> [Ljava.lang.Sting;@15f98bd, trfqn=wormanalysis,
> >> >> filecache=0rg.griphyn.vdl.karajan.lib.cache.CacheMapAdapter at 15f98f9,
> >> >> tr=wormanalysis}
> >> >>
> >> >> Any help would be appreciated. Thanks.
> >> >> -Alex
> >> >> _______________________________________________
> >> >> Swift-user mailing list
> >> >> Swift-user at ci.uchicago.edu
> >> >> http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
> >> >>
> >> >>
> >> >
> >> _______________________________________________
> >> Swift-user mailing list
> >> Swift-user at ci.uchicago.edu
> >> http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
> >
> >
>
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