[Swift-user] Running on Teraport

[Zhao Zhang]

Hi,

Try to put the following two lines after the <workdirectory>

<profile namespace="globus" key="queue">fast</profile>
<profile namespace="globus" key="maxwalltime">01:00:00</profile>

zhao

Alex Moore wrote:
> I'm running swift on tp-login.ci.uchicago.edu, and I want to run it on
> the cluster. I changed my swiftwork dir as Glen suggested so I now
> have:
>
> pool handle="localhost" >
>    <gridftp url="local://localhost" />
>    <execution provider="pbs" url="none"/>
>    <workdirectory>/home/amoore2/Work</workdirectory>
>    <profile namespace="karajan" key="jobThrottle">0</profile>
>  </pool>
>
> localhost   wormanalysis    /home/amoore2/work/run_wormanalysis.sh
> INSTALLED    INTEL32::LINUX null
>
> as my sites.xml and tc.dat files. I get the same error message:
>
> Caused by:
> Cannot submit job: java.io.IOException: qsub: not found
>
> It also says that it "Failed to transfer wrapper log from
> wormanalysis-......../info/9 on localhost" when I run the program
>
> -Alex
>
> On Mon, Jun 22, 2009 at 1:26 PM, Glen Hocky<hockyg at uchicago.edu> wrote:
>   
>> <pool handle="teraport" >
>>   <profile namespace="globus" key="queue">fast</profile>
>>   <profile namespace="globus" key="maxwalltime">01:00:00</profile>
>>   <gridftp url="local://localhost" />
>>   <execution provider="pbs" url="none" jobmanager="local:pbs" />
>>   <workdirectory>/home/hockyg/swiftwork</workdirectory>
>> </pool>
>>
>> change swiftwork dir
>>
>> On Mon, Jun 22, 2009 at 1:10 PM, Alex Moore <amoore2 at uchicago.edu> wrote:
>>     
>>> Thanks, that got it running. I get a different error message now though:
>>>
>>> Execution failed:
>>> Exception in wormanalysis
>>> Arguments: [home/amoore2/Work/Data/070326.tif,
>>> home/amoore2/Work/Save/Ang-Def.0006.dat,
>>> home/amoore2/Work/Save/Props.0006.dat]
>>> Host: localhost
>>> Directory:
>>> wormanalysis-20090622-1303-7z3h1d62/jobs/0/wormanalysis-0mumlmcj
>>> stderr.txt
>>>
>>> stdout.txt
>>>
>>> ----
>>> Caused by:
>>> Cannot submit job: java.io.IOException: qsub: not found
>>>
>>> The program loads an image file from my CI account as input and
>>> outputs two .dat files to a directory on my CI account as well- I
>>> don't know if it might be something in my code that is causing this.
>>> Thanks.
>>> -Alex
>>>
>>> On Mon, Jun 22, 2009 at 12:54 PM, Zhao Zhang<zhaozhang at uchicago.edu>
>>> wrote:
>>>       
>>>> Hi, Alex
>>>>
>>>> # sitename   transformation   path   INSTALLED    platform    profiles
>>>> pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
>>>> INSTALLED    INTEL32::LINUX null
>>>>
>>>> change the "pbs" above to localhost.
>>>> That "sitename" field should be the same as the <pool handle> in
>>>> sites.xml
>>>>
>>>> best
>>>> zhao
>>>>
>>>>
>>>> Alex Moore wrote:
>>>>         
>>>>> Trying to run a job on Teraport. Logged into tp-login.ci.uchicago.edu.
>>>>> Use the following entries for sites.xml and tc.dat:
>>>>> ------
>>>>>  <pool handle="localhost">
>>>>>    <gridftp  url="local://localhost" />
>>>>>    <execution provider="pbs" url="none" />
>>>>>    <workdirectory >/var/tmp</workdirectory>
>>>>>    <profile namespace="karajan" key="jobThrottle">0</profile>
>>>>>  </pool>
>>>>> ----------
>>>>> # sitename   transformation   path   INSTALLED    platform    profiles
>>>>> pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
>>>>> INSTALLED    INTEL32::LINUX null
>>>>> ----------
>>>>>
>>>>> My swift program call an app named wormanalysis that is on my ci
>>>>> account. Runs fine locally. Mike Wilde said that changing the
>>>>> "<execution provider="  to pbs instead of localhost should work. Got
>>>>> the following error message:
>>>>>
>>>>> Execution failed:
>>>>> Could no find any valid host for the task "Task( type=UNKNOWN,
>>>>> identity=urn:cog-1245692325277)" with constraints {filenames=
>>>>> [Ljava.lang.Sting;@15f98bd, trfqn=wormanalysis,
>>>>> filecache=0rg.griphyn.vdl.karajan.lib.cache.CacheMapAdapter at 15f98f9,
>>>>> tr=wormanalysis}
>>>>>
>>>>> Any help would be appreciated. Thanks.
>>>>> -Alex
>>>>> _______________________________________________
>>>>> Swift-user mailing list
>>>>> Swift-user at ci.uchicago.edu
>>>>> http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
>>>>>
>>>>>
>>>>>           
>>> _______________________________________________
>>> Swift-user mailing list
>>> Swift-user at ci.uchicago.edu
>>> http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
>>>       
>>     
>
>