[Swift-user] Running on Teraport

[Zhao Zhang]

Ah, yes

add the following two lines in ~/.soft
+maui
+torque

then do what Glen said will fix the problem.

zhao

Glen Hocky wrote:
> You have to change your environment until typing "qstat" on the 
> command line works.
> I'm guessing if you edit $HOME/.soft and put in the line
>
> +torque
>
> and then type
>
> resoft;source ~/.bashrc
>
> you'll be good to go
>
> On Mon, Jun 22, 2009 at 2:14 PM, Alex Moore <amoore2 at uchicago.edu 
> <mailto:amoore2 at uchicago.edu>> wrote:
>
>     I'm running swift on tp-login.ci.uchicago.edu
>     <http://tp-login.ci.uchicago.edu>, and I want to run it on
>     the cluster. I changed my swiftwork dir as Glen suggested so I now
>     have:
>
>     pool handle="localhost" >
>       <gridftp url="local://localhost" />
>       <execution provider="pbs" url="none"/>
>       <workdirectory>/home/amoore2/Work</workdirectory>
>       <profile namespace="karajan" key="jobThrottle">0</profile>
>      </pool>
>
>     localhost   wormanalysis    /home/amoore2/work/run_wormanalysis.sh
>     INSTALLED    INTEL32::LINUX null
>
>     as my sites.xml and tc.dat files. I get the same error message:
>
>     Caused by:
>     Cannot submit job: java.io.IOException: qsub: not found
>
>     It also says that it "Failed to transfer wrapper log from
>     wormanalysis-......../info/9 on localhost" when I run the program
>
>     -Alex
>
>     On Mon, Jun 22, 2009 at 1:26 PM, Glen Hocky<hockyg at uchicago.edu
>     <mailto:hockyg at uchicago.edu>> wrote:
>     > <pool handle="teraport" >
>     >   <profile namespace="globus" key="queue">fast</profile>
>     >   <profile namespace="globus" key="maxwalltime">01:00:00</profile>
>     >   <gridftp url="local://localhost" />
>     >   <execution provider="pbs" url="none" jobmanager="local:pbs" />
>     >   <workdirectory>/home/hockyg/swiftwork</workdirectory>
>     > </pool>
>     >
>     > change swiftwork dir
>     >
>     > On Mon, Jun 22, 2009 at 1:10 PM, Alex Moore
>     <amoore2 at uchicago.edu <mailto:amoore2 at uchicago.edu>> wrote:
>     >>
>     >> Thanks, that got it running. I get a different error message
>     now though:
>     >>
>     >> Execution failed:
>     >> Exception in wormanalysis
>     >> Arguments: [home/amoore2/Work/Data/070326.tif,
>     >> home/amoore2/Work/Save/Ang-Def.0006.dat,
>     >> home/amoore2/Work/Save/Props.0006.dat]
>     >> Host: localhost
>     >> Directory:
>     >> wormanalysis-20090622-1303-7z3h1d62/jobs/0/wormanalysis-0mumlmcj
>     >> stderr.txt
>     >>
>     >> stdout.txt
>     >>
>     >> ----
>     >> Caused by:
>     >> Cannot submit job: java.io.IOException: qsub: not found
>     >>
>     >> The program loads an image file from my CI account as input and
>     >> outputs two .dat files to a directory on my CI account as well- I
>     >> don't know if it might be something in my code that is causing
>     this.
>     >> Thanks.
>     >> -Alex
>     >>
>     >> On Mon, Jun 22, 2009 at 12:54 PM, Zhao
>     Zhang<zhaozhang at uchicago.edu <mailto:zhaozhang at uchicago.edu>>
>     >> wrote:
>     >> > Hi, Alex
>     >> >
>     >> > # sitename   transformation   path   INSTALLED    platform  
>      profiles
>     >> > pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
>     >> > INSTALLED    INTEL32::LINUX null
>     >> >
>     >> > change the "pbs" above to localhost.
>     >> > That "sitename" field should be the same as the <pool handle> in
>     >> > sites.xml
>     >> >
>     >> > best
>     >> > zhao
>     >> >
>     >> >
>     >> > Alex Moore wrote:
>     >> >>
>     >> >> Trying to run a job on Teraport. Logged into
>     tp-login.ci.uchicago.edu <http://tp-login.ci.uchicago.edu>.
>     >> >> Use the following entries for sites.xml and tc.dat:
>     >> >> ------
>     >> >>  <pool handle="localhost">
>     >> >>    <gridftp  url="local://localhost" />
>     >> >>    <execution provider="pbs" url="none" />
>     >> >>    <workdirectory >/var/tmp</workdirectory>
>     >> >>    <profile namespace="karajan" key="jobThrottle">0</profile>
>     >> >>  </pool>
>     >> >> ----------
>     >> >> # sitename   transformation   path   INSTALLED    platform  
>      profiles
>     >> >> pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
>     >> >> INSTALLED    INTEL32::LINUX null
>     >> >> ----------
>     >> >>
>     >> >> My swift program call an app named wormanalysis that is on my ci
>     >> >> account. Runs fine locally. Mike Wilde said that changing the
>     >> >> "<execution provider="  to pbs instead of localhost should
>     work. Got
>     >> >> the following error message:
>     >> >>
>     >> >> Execution failed:
>     >> >> Could no find any valid host for the task "Task( type=UNKNOWN,
>     >> >> identity=urn:cog-1245692325277)" with constraints {filenames=
>     >> >> [Ljava.lang.Sting;@15f98bd, trfqn=wormanalysis,
>     >> >>
>     filecache=0rg.griphyn.vdl.karajan.lib.cache.CacheMapAdapter at 15f98f9,
>     >> >> tr=wormanalysis}
>     >> >>
>     >> >> Any help would be appreciated. Thanks.
>     >> >> -Alex
>     >> >> _______________________________________________
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>     >> >> Swift-user at ci.uchicago.edu <mailto:Swift-user at ci.uchicago.edu>
>     >> >> http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
>     >> >>
>     >> >>
>     >> >
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