[Swift-user] Running on Teraport

[Glen Hocky]

<pool handle="teraport" >
  <profile namespace="globus" key="queue">fast</profile>
  <profile namespace="globus" key="maxwalltime">01:00:00</profile>
  <gridftp url="local://localhost" />
  <execution provider="pbs" url="none" jobmanager="local:pbs" />
  <workdirectory>/home/hockyg/swiftwork</workdirectory>
</pool>

change swiftwork dir

On Mon, Jun 22, 2009 at 1:10 PM, Alex Moore <amoore2 at uchicago.edu> wrote:

> Thanks, that got it running. I get a different error message now though:
>
> Execution failed:
> Exception in wormanalysis
> Arguments: [home/amoore2/Work/Data/070326.tif,
> home/amoore2/Work/Save/Ang-Def.0006.dat,
> home/amoore2/Work/Save/Props.0006.dat]
> Host: localhost
> Directory: wormanalysis-20090622-1303-7z3h1d62/jobs/0/wormanalysis-0mumlmcj
> stderr.txt
>
> stdout.txt
>
> ----
> Caused by:
> Cannot submit job: java.io.IOException: qsub: not found
>
> The program loads an image file from my CI account as input and
> outputs two .dat files to a directory on my CI account as well- I
> don't know if it might be something in my code that is causing this.
> Thanks.
> -Alex
>
> On Mon, Jun 22, 2009 at 12:54 PM, Zhao Zhang<zhaozhang at uchicago.edu>
> wrote:
> > Hi, Alex
> >
> > # sitename   transformation   path   INSTALLED    platform    profiles
> > pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
> > INSTALLED    INTEL32::LINUX null
> >
> > change the "pbs" above to localhost.
> > That "sitename" field should be the same as the <pool handle> in
> sites.xml
> >
> > best
> > zhao
> >
> >
> > Alex Moore wrote:
> >>
> >> Trying to run a job on Teraport. Logged into tp-login.ci.uchicago.edu.
> >> Use the following entries for sites.xml and tc.dat:
> >> ------
> >>  <pool handle="localhost">
> >>    <gridftp  url="local://localhost" />
> >>    <execution provider="pbs" url="none" />
> >>    <workdirectory >/var/tmp</workdirectory>
> >>    <profile namespace="karajan" key="jobThrottle">0</profile>
> >>  </pool>
> >> ----------
> >> # sitename   transformation   path   INSTALLED    platform    profiles
> >> pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
> >> INSTALLED    INTEL32::LINUX null
> >> ----------
> >>
> >> My swift program call an app named wormanalysis that is on my ci
> >> account. Runs fine locally. Mike Wilde said that changing the
> >> "<execution provider="  to pbs instead of localhost should work. Got
> >> the following error message:
> >>
> >> Execution failed:
> >> Could no find any valid host for the task "Task( type=UNKNOWN,
> >> identity=urn:cog-1245692325277)" with constraints {filenames=
> >> [Ljava.lang.Sting;@15f98bd, trfqn=wormanalysis,
> >> filecache=0rg.griphyn.vdl.karajan.lib.cache.CacheMapAdapter at 15f98f9,
> >> tr=wormanalysis}
> >>
> >> Any help would be appreciated. Thanks.
> >> -Alex
> >> _______________________________________________
> >> Swift-user mailing list
> >> Swift-user at ci.uchicago.edu
> >> http://mail.ci.uchicago.edu/mailman/listinfo/swift-user
> >>
> >>
> >
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