[Swift-user] Running on Teraport

[Zhao Zhang]

Hi, Alex

On which machine are you running swift?

zhao

Alex Moore wrote:
> Thanks, that got it running. I get a different error message now though:
>
> Execution failed:
> Exception in wormanalysis
> Arguments: [home/amoore2/Work/Data/070326.tif,
> home/amoore2/Work/Save/Ang-Def.0006.dat,
> home/amoore2/Work/Save/Props.0006.dat]
> Host: localhost
> Directory: wormanalysis-20090622-1303-7z3h1d62/jobs/0/wormanalysis-0mumlmcj
> stderr.txt
>
> stdout.txt
>
> ----
> Caused by:
> Cannot submit job: java.io.IOException: qsub: not found
>
> The program loads an image file from my CI account as input and
> outputs two .dat files to a directory on my CI account as well- I
> don't know if it might be something in my code that is causing this.
> Thanks.
> -Alex
>
> On Mon, Jun 22, 2009 at 12:54 PM, Zhao Zhang<zhaozhang at uchicago.edu> wrote:
>   
>> Hi, Alex
>>
>> # sitename   transformation   path   INSTALLED    platform    profiles
>> pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
>> INSTALLED    INTEL32::LINUX null
>>
>> change the "pbs" above to localhost.
>> That "sitename" field should be the same as the <pool handle> in sites.xml
>>
>> best
>> zhao
>>
>>
>> Alex Moore wrote:
>>     
>>> Trying to run a job on Teraport. Logged into tp-login.ci.uchicago.edu.
>>> Use the following entries for sites.xml and tc.dat:
>>> ------
>>>  <pool handle="localhost">
>>>    <gridftp  url="local://localhost" />
>>>    <execution provider="pbs" url="none" />
>>>    <workdirectory >/var/tmp</workdirectory>
>>>    <profile namespace="karajan" key="jobThrottle">0</profile>
>>>  </pool>
>>> ----------
>>> # sitename   transformation   path   INSTALLED    platform    profiles
>>> pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
>>> INSTALLED    INTEL32::LINUX null
>>> ----------
>>>
>>> My swift program call an app named wormanalysis that is on my ci
>>> account. Runs fine locally. Mike Wilde said that changing the
>>> "<execution provider="  to pbs instead of localhost should work. Got
>>> the following error message:
>>>
>>> Execution failed:
>>> Could no find any valid host for the task "Task( type=UNKNOWN,
>>> identity=urn:cog-1245692325277)" with constraints {filenames=
>>> [Ljava.lang.Sting;@15f98bd, trfqn=wormanalysis,
>>> filecache=0rg.griphyn.vdl.karajan.lib.cache.CacheMapAdapter at 15f98f9,
>>> tr=wormanalysis}
>>>
>>> Any help would be appreciated. Thanks.
>>> -Alex
>>> _______________________________________________
>>> Swift-user mailing list
>>> Swift-user at ci.uchicago.edu
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>>>
>>>
>>>       
>
>