[Swift-user] Running on Teraport

[Alex Moore]

Thanks, that got it running. I get a different error message now though:

Execution failed:
Exception in wormanalysis
Arguments: [home/amoore2/Work/Data/070326.tif,
home/amoore2/Work/Save/Ang-Def.0006.dat,
home/amoore2/Work/Save/Props.0006.dat]
Host: localhost
Directory: wormanalysis-20090622-1303-7z3h1d62/jobs/0/wormanalysis-0mumlmcj
stderr.txt

stdout.txt

----
Caused by:
Cannot submit job: java.io.IOException: qsub: not found

The program loads an image file from my CI account as input and
outputs two .dat files to a directory on my CI account as well- I
don't know if it might be something in my code that is causing this.
Thanks.
-Alex

On Mon, Jun 22, 2009 at 12:54 PM, Zhao Zhang<zhaozhang at uchicago.edu> wrote:
> Hi, Alex
>
> # sitename   transformation   path   INSTALLED    platform    profiles
> pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
> INSTALLED    INTEL32::LINUX null
>
> change the "pbs" above to localhost.
> That "sitename" field should be the same as the <pool handle> in sites.xml
>
> best
> zhao
>
>
> Alex Moore wrote:
>>
>> Trying to run a job on Teraport. Logged into tp-login.ci.uchicago.edu.
>> Use the following entries for sites.xml and tc.dat:
>> ------
>>  <pool handle="localhost">
>>    <gridftp  url="local://localhost" />
>>    <execution provider="pbs" url="none" />
>>    <workdirectory >/var/tmp</workdirectory>
>>    <profile namespace="karajan" key="jobThrottle">0</profile>
>>  </pool>
>> ----------
>> # sitename   transformation   path   INSTALLED    platform    profiles
>> pbs     wormanalysis    /home/amoore2/work/run_wormanalysis.sh
>> INSTALLED    INTEL32::LINUX null
>> ----------
>>
>> My swift program call an app named wormanalysis that is on my ci
>> account. Runs fine locally. Mike Wilde said that changing the
>> "<execution provider="  to pbs instead of localhost should work. Got
>> the following error message:
>>
>> Execution failed:
>> Could no find any valid host for the task "Task( type=UNKNOWN,
>> identity=urn:cog-1245692325277)" with constraints {filenames=
>> [Ljava.lang.Sting;@15f98bd, trfqn=wormanalysis,
>> filecache=0rg.griphyn.vdl.karajan.lib.cache.CacheMapAdapter at 15f98f9,
>> tr=wormanalysis}
>>
>> Any help would be appreciated. Thanks.
>> -Alex
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>>
>>
>