[Swift-user] oops failures on OSG

Zhengxiong Hou zhengxiongh at uchicago.edu
Fri Feb 20 15:56:15 CST 2009


Hi,
    We encountered some failures when running oops within Engage VO or 
OSG VO on OSG by swift. Please have a look.
    The logs ( oops7-20090219-1827-6gqbuh81.0.rlog,  
oops7-20090219-1827-6gqbuh81.log, oops7-20090219-1827-6gqbuh81.d) have 
been saved to Ben's swift-logs directory.
    And the following is the standard output information when running it 
within Engage VO.
> Progress:  Submitted:27 Active:22 Finished successfully:51
> Progress:  Submitted:27 Active:22 Finished successfully:51
> Progress:  Submitted:27 Active:22 Finished successfully:51
> Progress:  Submitted:27 Active:22 Finished successfully:51
> Progress:  Submitted:27 Active:22 Finished successfully:51
> Progress:  Submitted:27 Active:21 Finished successfully:52
> Progress:  Submitted:27 Active:21 Finished successfully:52
> Progress:  Submitted:27 Active:21 Finished successfully:52
> Progress:  Submitted:27 Active:21 Finished successfully:52
> Progress:  Submitted:27 Active:21 Finished successfully:52
> Progress:  Submitted:27 Active:21 Finished successfully:52
> Progress:  Submitted:27 Active:21 Finished successfully:52
> Progress:  Submitted:26 Active:22 Finished successfully:52
> Progress:  Submitted:26 Active:22 Finished successfully:52
> Failed to transfer wrapper log from 
> oops7-20090219-1827-6gqbuh81/info/o on UCSDT2-B
> Progress:  Submitted:26 Active:21 Failed:1 Finished successfully:52
> Execution failed:
>        Exception in runoops:
> Arguments: [input/fasta/T1di2.fasta, input/secseq/T1di2.secseq, 
> input/native/T1di2.pdb, output/T1di2.26.pdt, output/T1di2.26.rmsd, 26, 
> TEMP UPDATE INTERVAL = 10, SMOOTH DEVIATION COEFFICIENT = 0.80001]
> Host: UCSDT2-B
> Directory: oops7-20090219-1827-6gqbuh81/jobs/o/runoops-on95pu6j
> stderr.txt:
>
> stdout.txt:
>

Thanks!
Zhengxiong



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