[Swift-user] coasters problem on teraport

Glen Hocky hockyg at uchicago.edu
Thu Apr 2 15:06:19 CDT 2009


I get the following error trying to run on teraport w/ coasters
> Progress:  Submitting:4 Failed:1 Finished successfully:10
> Execution failed:
>         Exception in runoops:
> Arguments: [input/fasta/T1dcj.fasta, 
> home/ghocks/oops/swift/output/teraportoutdir.1/T1dcj/T1dcj.ST10.TU10.0000.secseq, 
> input/native/T1dcj.pdb, 
> home/ghocks/oops/swift/output/teraportoutdir.1/T1dcj//ST10.TU10/0000/00/00/T1dcj.ST10.TU10.0000.0000.pdt, 
> home/ghocks/oops/swift/output/teraportoutdir.1/T1dcj//ST10.TU10/0000/00/00/T1dcj.ST10.TU10.0000.0000.rmsd, 
> 0, DEFAULT_INIT_TEMP_=_10, TEMP_UPDATE_INTERVAL_=_10, 
> MAX_NUMBER_OF_ANNEALING_STEPS_=_0, KILL_TIME_=_30]
> Host: teraport
> Directory: oops-20090402-1307-6ud4sy60/jobs/9/runoops-9h3jft8j
> stderr.txt:
>
> stdout.txt:
>
> ----
>
> Caused by:
>         Could not submit job
> Caused by:
>         Could not start coaster service
> Caused by:
>         Cannot submit job
> Caused by:
>         The job manager failed to open stderr
> Cleaning up...
>  Done
> Command exited with non-zero status 2
> real 189.93
> user 13.20
> sys 1.94
With sites files containing:
> <pool handle="teraport" >
>   <profile namespace="globus" key="queue">fast</profile>
>   <profile namespace="globus" 
> key="coasterWorkerMaxwalltime">01:00:00</profile>
>   <filesystem provider="coaster" 
> url="coaster-gt2://tp-grid1.ci.uchicago.edu" />
>   <execution provider="coaster" url="tp-grid1.ci.uchicago.edu" 
> jobmanager="gt2:gt2:pbs" />
>   <workdirectory>/home/hockyg/swiftwork</workdirectory>
> </pool>
> <pool handle="teraport" >
>   <profile namespace="globus" key="queue">fast</profile>
>   <profile namespace="globus" 
> key="coasterWorkerMaxwalltime">01:00:00</profile>
>   <gridftp url="gsiftp://tp-grid1.ci.uchicago.edu" />
>   <execution provider="coaster" url="tp-grid1.ci.uchicago.edu" 
> jobmanager="gt2:gt2:pbs" />
>   <workdirectory>/home/hockyg/swiftwork</workdirectory>
> </pool>





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