[Swift-devel] Urgent Friday evening problem ; -) :: vanilla R on Beagle

[Michael Wilde]

Lorenzo, maybe you should try to use the R 2.13 that I already built? Or did that fail to work for you for some reason?

- Mike


----- Original Message -----
> From: "Lorenzo Pesce" <lpesce at uchicago.edu>
> To: "Michael Wilde" <wilde at mcs.anl.gov>
> Cc: "swift-devel Devel" <swift-devel at ci.uchicago.edu>
> Sent: Monday, July 30, 2012 1:27:06 PM
> Subject: Re: [Swift-devel] Urgent Friday evening problem ; -) :: vanilla R on Beagle
> The good news is that for python worked as you said for the version
> they provide us with.
> We could both run multiple instances at the same time, but the
> environmental variables were not corrupted anymore.
> 
> Next step we'll test building a version and see if it does what we
> want.
> 
> R-2.15.1 instead of building brings down the login nodes. Literally.
> This morning I tried to build R-2.15.1 and
> while running ./configure the login poofed.
> Correlation is not causality, but I killed another node trying again,
> so I am pretty sure it is.
> 
> This is the last line before evaporating:
> checking whether integer division by zero raises SIGFPE...
> 
> under investigation.
> 
> temporary directory was set to /lustre/beagle/`whoami`'''' , but it
> doesn't seem to matter whether it is /tmp or lustre
> 
> On Jul 27, 2012, at 5:11 PM, Michael Wilde wrote:
> 
> > Lorenzo, I think the R in /home/wilde/R/beagle/R-2.13.1 ws indeed
> > built with module gcc, and thus should run with "node packing" (ie
> > multiple parallel copies per node).
> >
> > Build notes are in /home/wilde/R/README
> >
> > The build script used was: /home/wilde/R/releases/build.beagle
> > which does:
> >
> > ---
> > mod unload $(mod list | grep -i prg)
> > mod load gcc
> >
> > echo Using compiler: $(mod list | grep gcc)
> > echo 'Checking that PrgEnv has been unloaded (should be blank!):'
> > $(mod list | grep -i prg)
> >
> > rm -rf $MYRBUILD/beagle/$REL
> > #mkdir -p $MYRBUILD/beagle/$REL
> >
> > cd $MYRBUILD/beagle
> > tar zxf $MYRBUILD/$REL.tar.gz
> > cd $REL
> >
> > # make clean
> > ./configure --prefix=$MYRINSTALL/beagle/$REL # --enable-R-shlib
> > make
> > make install
> > ---
> >
> > - Mike
> >
> > ----- Original Message -----
> >> From: "Michael Wilde" <wilde at mcs.anl.gov>
> >> To: "Lorenzo Pesce" <lpesce at uchicago.edu>
> >> Cc: "swift-devel Devel" <swift-devel at ci.uchicago.edu>
> >> Sent: Friday, July 27, 2012 5:02:31 PM
> >> Subject: Re: [Swift-devel] Urgent Friday evening problem ; -) ::
> >> vanilla R on Beagle
> >> Hi Lorenzo, sorry, just saw your message. Try this R:
> >>
> >> login1$ pwd
> >> /home/wilde/R/beagle/R-2.13.1
> >> login1$ ls
> >> COPYING INSTALL Makefile.fw NEWS ONEWS README VERSION config.site
> >> configure.ac etc/ m4/ share/ tests/
> >> ChangeLog Makeconf.in Makefile.in NEWS.pdf OONEWS SVN-REVISION bin/
> >> configure* doc/ lib64/ po/ src/ tools/
> >> login1$ bin/R
> >>
> >> R version 2.13.1 (2011-07-08)
> >> Copyright (C) 2011 The R Foundation for Statistical Computing
> >>
> >> - Mike
> >>
> >>
> >> ----- Original Message -----
> >>> From: "Lorenzo Pesce" <lpesce at uchicago.edu>
> >>> To: "Michael Wilde" <wilde at mcs.anl.gov>
> >>> Cc: "swift-devel Devel" <swift-devel at ci.uchicago.edu>
> >>> Sent: Friday, July 27, 2012 2:24:38 PM
> >>> Subject: Urgent Friday evening problem ;-) :: vanilla R on Beagle
> >>> Has any one a version of R that works on the compute nodes and can
> >>> be
> >>> packed?
> >>> If not, I will build one.
> >>>
> >>> I just convinced a user of beagle to move all her urgent analysis
> >>> to
> >>> swift. Please :-)
> >>>
> >>>
> >>> Lorenzo
> >>
> >> --
> >> Michael Wilde
> >> Computation Institute, University of Chicago
> >> Mathematics and Computer Science Division
> >> Argonne National Laboratory
> >>
> >> _______________________________________________
> >> Swift-devel mailing list
> >> Swift-devel at ci.uchicago.edu
> >> https://lists.ci.uchicago.edu/cgi-bin/mailman/listinfo/swift-devel
> >
> > --
> > Michael Wilde
> > Computation Institute, University of Chicago
> > Mathematics and Computer Science Division
> > Argonne National Laboratory
> >

-- 
Michael Wilde
Computation Institute, University of Chicago
Mathematics and Computer Science Division
Argonne National Laboratory