[Swift-devel] coasters and java on queen bee

[Michael Wilde]

Hmm. Note that the ports below get you to the GT5 GRAM service at QueenBee.

One possibility is that perhaps the services differ in whether they run softenv, .bashrc, etc?  Needs more experimentation to understand the discrepancies we are seeing.

Maybe you can try the different URIs manually and see what PATH gets set up, if it seems that the discrepancy is related to that.

- Mike



----- "Sarah Kenny" <skenny at uchicago.edu> wrote:

> awesome, using your sites file it's working...although, weird thing
> is
> it wasn't the java line at all. it looks like it has to do with
> specifying the port on the coaster line. i usually don't specify port
> for other sites (e.g. abe) but i tried that and it worked. in fact,
> even if i remove the PATHPREFIX setting in your sties file it still
> works as long as port is specified, if i remove the port
> specification
> it fails as before...not sure how/why the port affects the java
> version but that seems to be the case:
> 
> <execution provider="coaster" url="grid-qb.loni-lsu.teragrid.org"
> jobManager="gt2:gt2:PBS"/>
> 
> <execution provider="coaster"
> url="grid-qb.loni-lsu.teragrid.org:2120"
> jobmanager="gt2:gt2:pbs"/>
> 
> anyway, it's running...thanks!
> 
> ~sk
> 
> On Wed, Jun 30, 2010 at 11:51 AM,  <wilde at mcs.anl.gov> wrote:
> > Yup, job finished, so seems to have basic sanity.
> >
> > Sites entry is below. I used the SIDGrid TG DBS acct, and my Swift
> build:
> >  /home/wilde/swift/src/stable/cog/modules/swift/dist/swift-svn/bin
> >
> > - Mike
> >
> >
> >  <pool handle="pbs">
> >
> >    <execution provider="coaster"
> url="grid-qb.loni-lsu.teragrid.org:2120" jobmanager="gt2:gt2:pbs"/>
> >
> >    <profile namespace="globus" key="workersPerNode">8</profile>
> >    <profile namespace="globus" key="slots">1</profile>
> >    <profile namespace="globus" key="nodeGranularity">1</profile>
> >    <profile namespace="globus" key="maxNodes">1</profile>
> >    <profile namespace="karajan" key="jobThrottle">.15</profile>
> >    <profile namespace="karajan" key="initialScore">10000</profile>
> >    <profile namespace="env"
> key="PATHPPREFIX">/usr/local/compilers/jdk/bin</profile>
> >
> >    <profile namespace="globus"
> key="project">TG-DBSACCTHERE</profile>
> >
> >    <gridftp url="gridftp-qb.loni-lsu.teragrid.org:2811" />
> >    <workdirectory>/home/ux454325/swiftwork</workdirectory>
> >
> >  </pool>
> >
> >
> >
> >
> > ----- "Sarah Kenny" <skenny at uchicago.edu> wrote:
> >
> >> yeah, you definitely got further than me if you're in the
> queue...but
> >> i can't replicate this (even when i update to the latest swift)
> can
> >> you post your whole sites and tc files?
> >>
> >> thanks
> >> ~sk
> >>
> >> On Tue, Jun 29, 2010 at 3:45 PM, Michael Wilde <wilde at mcs.anl.gov>
> >> wrote:
> >> > I added this line to sites.xml, and now I see a PBS job queued
> on
> >> QueenBee, which I *think* means that the coaster service was able
> to
> >> start:
> >> >
> >> > <profile namespace="env"
> >> key="PATHPPREFIX">/usr/local/compilers/jdk/bin</profile>
> >> >
> >> > - Mike
> >> >
> >> >
> >> > ----- "Mihael Hategan" <hategan at mcs.anl.gov> wrote:
> >> >
> >> >> On Tue, 2010-06-29 at 12:32 -0500, wilde at mcs.anl.gov wrote:
> >> >> > With my login, globus-job-run gets gcj (see below). When I
> login
> >> to
> >> >> QueenBee, my default .soft entries give me Sun Java 1.6.
> >> >> >
> >> >> > When I use globus-job-run, neither .profile nor .bashrc seems
> to
> >> be
> >> >> run (as I placed PATH= statements in both).
> >> >> >
> >> >> > Mihael, is there any other provision to find the right Java
> for
> >> >> coaster service startup?
> >> >>
> >> >> The addition of it to PATH should be sufficient as far as I can
> >> tell.
> >> >>
> >> >> I can try to debug it.
> >> >>
> >> >> Skenny, can you pass me your sites file?
> >> >>
> >> >> Mihael
> >> >
> >> > --
> >> > Michael Wilde
> >> > Computation Institute, University of Chicago
> >> > Mathematics and Computer Science Division
> >> > Argonne National Laboratory
> >> >
> >> >
> >
> > --
> > Michael Wilde
> > Computation Institute, University of Chicago
> > Mathematics and Computer Science Division
> > Argonne National Laboratory
> >
> >

-- 
Michael Wilde
Computation Institute, University of Chicago
Mathematics and Computer Science Division
Argonne National Laboratory