[Swift-devel] coasters and java on queen bee

[Sarah Kenny]

one thing i can tell currently is that it's NOT running my .bashrc
using that port.

On Wed, Jun 30, 2010 at 12:39 PM, Michael Wilde <wilde at mcs.anl.gov> wrote:
> Hmm. Note that the ports below get you to the GT5 GRAM service at QueenBee.
>
> One possibility is that perhaps the services differ in whether they run softenv, .bashrc, etc?  Needs more experimentation to understand the discrepancies we are seeing.
>
> Maybe you can try the different URIs manually and see what PATH gets set up, if it seems that the discrepancy is related to that.
>
> - Mike
>
>
>
> ----- "Sarah Kenny" <skenny at uchicago.edu> wrote:
>
>> awesome, using your sites file it's working...although, weird thing
>> is
>> it wasn't the java line at all. it looks like it has to do with
>> specifying the port on the coaster line. i usually don't specify port
>> for other sites (e.g. abe) but i tried that and it worked. in fact,
>> even if i remove the PATHPREFIX setting in your sties file it still
>> works as long as port is specified, if i remove the port
>> specification
>> it fails as before...not sure how/why the port affects the java
>> version but that seems to be the case:
>>
>> <execution provider="coaster" url="grid-qb.loni-lsu.teragrid.org"
>> jobManager="gt2:gt2:PBS"/>
>>
>> <execution provider="coaster"
>> url="grid-qb.loni-lsu.teragrid.org:2120"
>> jobmanager="gt2:gt2:pbs"/>
>>
>> anyway, it's running...thanks!
>>
>> ~sk
>>
>> On Wed, Jun 30, 2010 at 11:51 AM,  <wilde at mcs.anl.gov> wrote:
>> > Yup, job finished, so seems to have basic sanity.
>> >
>> > Sites entry is below. I used the SIDGrid TG DBS acct, and my Swift
>> build:
>> >  /home/wilde/swift/src/stable/cog/modules/swift/dist/swift-svn/bin
>> >
>> > - Mike
>> >
>> >
>> >  <pool handle="pbs">
>> >
>> >    <execution provider="coaster"
>> url="grid-qb.loni-lsu.teragrid.org:2120" jobmanager="gt2:gt2:pbs"/>
>> >
>> >    <profile namespace="globus" key="workersPerNode">8</profile>
>> >    <profile namespace="globus" key="slots">1</profile>
>> >    <profile namespace="globus" key="nodeGranularity">1</profile>
>> >    <profile namespace="globus" key="maxNodes">1</profile>
>> >    <profile namespace="karajan" key="jobThrottle">.15</profile>
>> >    <profile namespace="karajan" key="initialScore">10000</profile>
>> >    <profile namespace="env"
>> key="PATHPPREFIX">/usr/local/compilers/jdk/bin</profile>
>> >
>> >    <profile namespace="globus"
>> key="project">TG-DBSACCTHERE</profile>
>> >
>> >    <gridftp url="gridftp-qb.loni-lsu.teragrid.org:2811" />
>> >    <workdirectory>/home/ux454325/swiftwork</workdirectory>
>> >
>> >  </pool>
>> >
>> >
>> >
>> >
>> > ----- "Sarah Kenny" <skenny at uchicago.edu> wrote:
>> >
>> >> yeah, you definitely got further than me if you're in the
>> queue...but
>> >> i can't replicate this (even when i update to the latest swift)
>> can
>> >> you post your whole sites and tc files?
>> >>
>> >> thanks
>> >> ~sk
>> >>
>> >> On Tue, Jun 29, 2010 at 3:45 PM, Michael Wilde <wilde at mcs.anl.gov>
>> >> wrote:
>> >> > I added this line to sites.xml, and now I see a PBS job queued
>> on
>> >> QueenBee, which I *think* means that the coaster service was able
>> to
>> >> start:
>> >> >
>> >> > <profile namespace="env"
>> >> key="PATHPPREFIX">/usr/local/compilers/jdk/bin</profile>
>> >> >
>> >> > - Mike
>> >> >
>> >> >
>> >> > ----- "Mihael Hategan" <hategan at mcs.anl.gov> wrote:
>> >> >
>> >> >> On Tue, 2010-06-29 at 12:32 -0500, wilde at mcs.anl.gov wrote:
>> >> >> > With my login, globus-job-run gets gcj (see below). When I
>> login
>> >> to
>> >> >> QueenBee, my default .soft entries give me Sun Java 1.6.
>> >> >> >
>> >> >> > When I use globus-job-run, neither .profile nor .bashrc seems
>> to
>> >> be
>> >> >> run (as I placed PATH= statements in both).
>> >> >> >
>> >> >> > Mihael, is there any other provision to find the right Java
>> for
>> >> >> coaster service startup?
>> >> >>
>> >> >> The addition of it to PATH should be sufficient as far as I can
>> >> tell.
>> >> >>
>> >> >> I can try to debug it.
>> >> >>
>> >> >> Skenny, can you pass me your sites file?
>> >> >>
>> >> >> Mihael
>> >> >
>> >> > --
>> >> > Michael Wilde
>> >> > Computation Institute, University of Chicago
>> >> > Mathematics and Computer Science Division
>> >> > Argonne National Laboratory
>> >> >
>> >> >
>> >
>> > --
>> > Michael Wilde
>> > Computation Institute, University of Chicago
>> > Mathematics and Computer Science Division
>> > Argonne National Laboratory
>> >
>> >
>
> --
> Michael Wilde
> Computation Institute, University of Chicago
> Mathematics and Computer Science Division
> Argonne National Laboratory
>
>