[Fwd: Re: [Swift-devel] Problems with Swift trunk on abe]

Tue Nov 3 11:15:42 CST 2009

Im running the Swift test battery on Ranger and Abe.

Tests on Abe just got this, which is similar to what I was seeing:

...
Running test 0024-compound at Tue Nov 3 11:11:33 CST 2009
Swift svn swift-r3186 cog-r2572

RunID: 20091103-1111-as1yb7s3
Progress:
Execution failed:
	First argument must be an identifier or a list of identifiers
SWIFT RETURN CODE NON-ZERO - test 0024-compound.swift
...

---

Ranger passed all syntax tests but is hanging on 001-echo. Not sure why yet.

I'll keep trying to zero in on something small thats reproducble.
0024-compound might be a good starting point.

Let me know if you need something specific from me, or have suggestions 
on what to try, where.

Thanks,

Mike

On 11/3/09 11:05 AM, Mihael Hategan wrote:
> Thanks. I'm looking into it.
> 
> On Tue, 2009-11-03 at 10:19 -0600, Michael Wilde wrote:
>> Similar problems happen on Ranger.  I used an older Swift build 
>> initially, and it ran.
>>
>> Then I updated to the latest, and I get the following similar failure:
>>
>> RunID: 20091103-1016-khfn59yf
>> Progress:
>> Ex098
>> java.lang.NullPointerException
>>          at 
>> org.globus.cog.karajan.workflow.nodes.functions.Variable.function(Variable.java:38)
>>          at 
>> org.globus.cog.karajan.workflow.nodes.functions.AbstractFunction.post(AbstractFunction.java:45)
>>          at 
>> org.globus.cog.karajan.workflow.nodes.Sequential.startNext(Sequential.java:51)
>> ...
>> edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:643)
>>          at 
>> edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:668)
>>          at java.lang.Thread.run(Thread.java:619)
>> Execution failed:
>>          Argument size mismatch. Got 1 names and 2 values
>> login3$
>>
>> Im going try the bgp next. If it works there, we can leave this issue 
>> for after SC. Else, I'll need to resolve it.
>>
>> - Mike
>>
>> -------- Original Message --------
>> Subject: Re: [Swift-devel] Problems with Swift trunk on abe
>> Date: Tue, 03 Nov 2009 08:18:55 -0600
>> From: Michael Wilde <wilde at mcs.anl.gov>
>> To: swift-devel <swift-devel at ci.uchicago.edu>
>> References: <4AF03842.70300 at mcs.anl.gov>
>>
>> Using the Swift build (and swift.properties) that works on communicado,
>> I still get the same failures on Abe.
>>
>> I'm going to try a few other systems to see if the problem is widespread
>> or local to Abe.
>>
>> - Mike
>>
>>
>> On 11/3/09 8:03 AM, Michael Wilde wrote:
>>> What seems like the a build of the same Swift & CoG svn revision is 
>>> working on communicado but giving strange and transient results on Abe.
>>>
>>> A series of 5 runs of the same code (with .xml and .kml files left in 
>>> place) give the set of errors below.
>>>
>>> I will try to use the release build on communicado, to see if this is 
>>> being caused by some Java compiler difference on Abe.
>>>
>>> Suggestions welcome. Mihael, I can get you the logs - they are on abe in 
>>> ~wilde/run.58, along with the source: psim.basicex1.swift
>>>
>>> - Mike
>>>
>>> Output with a few progress and blank lines removed:
>>>
>>> (full output is in: http://www.ci.uchicago.edu/~wilde/abe.swiftproblem.txt )
>>>
>>> honest4$ ls
>>>
>>> Protein.map*  Protein.map~*  etc  input@  logs/  psim.basicex1.swift* 
>>> sites.xml  t.swift*  t.swift~*  tc  tc~
>>>
>>> honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift
>>>
>>> Swift svn swift-r3186 cog-r2572
>>> RunID: 20091103-0750-p7z85z61
>>> Execution failed:
>>>          Argument size mismatch. Got 5 names and 0 values
>>>
>>> honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift
>>>
>>> Swift svn swift-r3186 cog-r2572
>>> RunID: 20091103-0751-sfxthnne
>>> Execution failed:
>>>          Argument size mismatch. Got 5 names and 0 values
>>>
>>> honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift
>>>
>>> Swift svn swift-r3186 cog-r2572
>>> RunID: 20091103-0751-oxnhztrc
>>> Progress:
>>> Execution failed:
>>>          Argument size mismatch. Got 5 names and 0 values
>>>
>>> honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift
>>>
>>> Swift svn swift-r3186 cog-r2572
>>> RunID: 20091103-0751-amtfuvq9
>>> Execution failed:
>>>          Variable not found: path
>>>
>>> honest4$ swift -tc.file tc -sites.file sites.xml psim.basicex1.swift
>>>
>>> Swift svn swift-r3186 cog-r2572
>>> RunID: 20091103-0751-b4sr44x2
>>> Execution failed:
>>>          Ex098
>>> org.globus.cog.karajan.workflow.KarajanRuntimeException: Invalid 
>>> identifier: [$, org.griphyn.vdl.mapping.DataNode identifier tag:benc at ci.uch\
>>> icago.edu,2008:swift:dataset:20091103-0751-b65c863d:720000000020 type 
>>> ProtGeo with no value at dataset=structure path=[1] (not closed)]
>>>          at 
>>> org.globus.cog.karajan.util.TypeUtil.toIdentifier(TypeUtil.java:286)
>>> ...
>>>          at java.lang.Thread.run(Thread.java:595)
>>> Variable not found: path
>>> honest4$
>>>
>>>
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