[Swift-devel] RE: [Swift-user] Execution error

Mihael Hategan hategan at mcs.anl.gov
Thu Apr 30 18:36:21 CDT 2009 

On Thu, 2009-04-30 at 18:12 -0500, Yue, Chen - BMD wrote:
> Hi Mihael,
>  
> I tried and the error message is the same. I attached the following
> trace.

Well, lonestar doesn't use PBS, but LSF. So for lonestar, use
gt2:gt2:lsf.

>  
> ///////////////////////////////
> [yuechen at communicado PTMap2]$ swift PTMap2-unmod.swift -sites.file
> sites.xml -tc.file tc.data
> Swift 0.9rc2 swift-r2860 cog-r2388
> RunID: 20090430-1809-ppue84jc
> Progress:
> Progress:  Stage in:1
> Progress:  Stage in:1
> Progress:  Stage in:1
> Progress:  Submitting:1
> Progress:  Submitting:1
> Progress:  Submitted:1
> Progress:  Active:1
> Failed to transfer wrapper log from
> PTMap2-unmod-20090430-1809-ppue84jc/info/m on TACC_LoneStar
> Progress:  Active:1
> Failed to transfer wrapper log from
> PTMap2-unmod-20090430-1809-ppue84jc/info/o on TACC_LoneStar
> Progress:  Stage in:1
> Progress:  Active:1
> Failed to transfer wrapper log from
> PTMap2-unmod-20090430-1809-ppue84jc/info/q on TACC_LoneStar
> Progress:  Failed:1
> Execution failed:
>         Exception in PTMap2:
> Arguments: [e04.mzXML, ./seqs-ecolik12/fasta02, inputs-unmod.txt,
> parameters.txt]
> Host: TACC_LoneStar
> Directory: PTMap2-unmod-20090430-1809-ppue84jc/jobs/q/PTMap2-q3acr5aj
> stderr.txt:
> stdout.txt:
> ----
> Caused by:
>         Cannot submit job
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> Cannot submit job
>         at
> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:145)
>         at
> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:99)
>         at
> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
>         at
> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)
>         at
> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)
>         at
> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)
> Caused by: org.globus.gram.GramException: The gatekeeper failed to
> find the requested service
>         at org.globus.gram.Gram.checkHttpReply(Gram.java:137)
>         at org.globus.gram.Gram.request(Gram.java:342)
>         at org.globus.gram.GramJob.request(GramJob.java:262)
>         at
> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:133)
>         ... 5 more
> Cleaning up...
> Shutting down service at https://129.114.50.32:35904
> Got channel MetaChannel: 16618296 -> GSSSChannel-null(1)
> - Done
> //////////////////////////////////
>  
> My sites.xml for TACC Lonestar is :
>  
>  <pool handle="TACC_LoneStar">
>     <gridftp url="gsiftp://tg-gridftp.lonestar.tacc.teragrid.org"/>
>     <execution provider="coaster"
> url="gatekeeper.lonestar.tacc.teragrid.org" jobManager="gt2:gt2:pbs"/>
>     <workdirectory>/tmp/scratch/yc/swiftwork</workdirectory>
>  </pool>
> 
> Thanks!
>  
> Chen, Yue
>  
> 
> 
> ______________________________________________________________________
> From: Mihael Hategan [mailto:hategan at mcs.anl.gov]
> Sent: Thu 4/30/2009 6:08 PM
> To: Yue, Chen - BMD
> Cc: Michael Wilde; swift-devel
> Subject: RE: [Swift-devel] RE: [Swift-user] Execution error
> 
> 
> Odd. Try "gt2:gt2:pbs" instead of "gt2:gt2:PBS".
> 
> On Thu, 2009-04-30 at 17:57 -0500, Yue, Chen - BMD wrote:
> > Hi Mihael,
> > 
> > The error message is different after I change from gt2:PBS to
> > gt2:gt2:PBS on TACC LoneStar. I attached the trace as following. I
> > don't know if there is still setup problem. Thank you very much!
> > 
> > /////////////////////////
> > [yuechen at communicado PTMap2]$ swift PTMap2-unmod.swift -sites.file
> > sites.xml -tc.file tc.data
> > Swift 0.9rc2 swift-r2860 cog-r2388
> > RunID: 20090430-1742-tfabq6q4
> > Progress:
> > Progress:  Stage in:1
> > Progress:  Stage in:1
> > Progress:  Stage in:1
> > Progress:  Submitting:1
> > Progress:  Submitted:1
> > Progress:  Active:1
> > Failed to transfer wrapper log from
> > PTMap2-unmod-20090430-1742-tfabq6q4/info/r on TACC_LoneStar
> > Progress:  Active:1
> > Failed to transfer wrapper log from
> > PTMap2-unmod-20090430-1742-tfabq6q4/info/t on TACC_LoneStar
> > Progress:  Stage in:1
> > Progress:  Active:1
> > Failed to transfer wrapper log from
> > PTMap2-unmod-20090430-1742-tfabq6q4/info/v on TACC_LoneStar
> > Progress:  Failed:1
> > Execution failed:
> >         Exception in PTMap2:
> > Arguments: [e04.mzXML, ./seqs-ecolik12/fasta02, inputs-unmod.txt,
> > parameters.txt]
> > Host: TACC_LoneStar
> > Directory:
> PTMap2-unmod-20090430-1742-tfabq6q4/jobs/v/PTMap2-v7baq5aj
> > stderr.txt:
> > stdout.txt:
> > ----
> > Caused by:
> >         Cannot submit job
> > org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> > Cannot submit job
> >         at
> >
> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:145)
> >         at
> >
> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:99)
> >         at
> >
> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
> >         at
> >
> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)
> >         at
> >
> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)
> >         at
> >
> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)
> > Caused by: org.globus.gram.GramException: The gatekeeper failed to
> > find the requested service
> >         at org.globus.gram.Gram.checkHttpReply(Gram.java:137)
> >         at org.globus.gram.Gram.request(Gram.java:342)
> >         at org.globus.gram.GramJob.request(GramJob.java:262)
> >         at
> >
> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:133)
> >         ... 5 more
> > Cleaning up...
> > Shutting down service at https://129.114.50.32:35257
> > Got channel MetaChannel: 13391897 -> GSSSChannel-null(1)
> > - Done
> > ////////////////////////
> > 
> > Chen, Yue
> >
> >
> 
> 
> 
>  
> 
> 
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