[Swift-devel] RE: [Swift-user] Execution error

Yue, Chen - BMD yuechen at bsd.uchicago.edu
Thu Apr 30 18:12:19 CDT 2009 

Hi Mihael,
 
I tried and the error message is the same. I attached the following trace.
 
///////////////////////////////
[yuechen at communicado PTMap2]$ swift PTMap2-unmod.swift -sites.file sites.xml -tc.file tc.data
Swift 0.9rc2 swift-r2860 cog-r2388
RunID: 20090430-1809-ppue84jc
Progress:
Progress:  Stage in:1
Progress:  Stage in:1
Progress:  Stage in:1
Progress:  Submitting:1
Progress:  Submitting:1
Progress:  Submitted:1
Progress:  Active:1
Failed to transfer wrapper log from PTMap2-unmod-20090430-1809-ppue84jc/info/m on TACC_LoneStar
Progress:  Active:1
Failed to transfer wrapper log from PTMap2-unmod-20090430-1809-ppue84jc/info/o on TACC_LoneStar
Progress:  Stage in:1
Progress:  Active:1
Failed to transfer wrapper log from PTMap2-unmod-20090430-1809-ppue84jc/info/q on TACC_LoneStar
Progress:  Failed:1
Execution failed:
        Exception in PTMap2:
Arguments: [e04.mzXML, ./seqs-ecolik12/fasta02, inputs-unmod.txt, parameters.txt]
Host: TACC_LoneStar
Directory: PTMap2-unmod-20090430-1809-ppue84jc/jobs/q/PTMap2-q3acr5aj
stderr.txt:
stdout.txt:
----
Caused by:
        Cannot submit job
org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job
        at org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:145)
        at org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:99)
        at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
        at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)
        at org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)
        at org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)
Caused by: org.globus.gram.GramException: The gatekeeper failed to find the requested service
        at org.globus.gram.Gram.checkHttpReply(Gram.java:137)
        at org.globus.gram.Gram.request(Gram.java:342)
        at org.globus.gram.GramJob.request(GramJob.java:262)
        at org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:133)
        ... 5 more
Cleaning up...
Shutting down service at https://129.114.50.32:35904 <https://129.114.50.32:35904> 
Got channel MetaChannel: 16618296 -> GSSSChannel-null(1)
- Done
//////////////////////////////////
 
My sites.xml for TACC Lonestar is :
 
 <pool handle="TACC_LoneStar">
    <gridftp url="gsiftp://tg-gridftp.lonestar.tacc.teragrid.org"/>
    <execution provider="coaster" url="gatekeeper.lonestar.tacc.teragrid.org" jobManager="gt2:gt2:pbs"/>
    <workdirectory>/tmp/scratch/yc/swiftwork</workdirectory>
 </pool>

Thanks!
 
Chen, Yue
 

________________________________

From: Mihael Hategan [mailto:hategan at mcs.anl.gov]
Sent: Thu 4/30/2009 6:08 PM
To: Yue, Chen - BMD
Cc: Michael Wilde; swift-devel
Subject: RE: [Swift-devel] RE: [Swift-user] Execution error



Odd. Try "gt2:gt2:pbs" instead of "gt2:gt2:PBS".

On Thu, 2009-04-30 at 17:57 -0500, Yue, Chen - BMD wrote:
> Hi Mihael,
> 
> The error message is different after I change from gt2:PBS to
> gt2:gt2:PBS on TACC LoneStar. I attached the trace as following. I
> don't know if there is still setup problem. Thank you very much!
> 
> /////////////////////////
> [yuechen at communicado PTMap2]$ swift PTMap2-unmod.swift -sites.file
> sites.xml -tc.file tc.data
> Swift 0.9rc2 swift-r2860 cog-r2388
> RunID: 20090430-1742-tfabq6q4
> Progress:
> Progress:  Stage in:1
> Progress:  Stage in:1
> Progress:  Stage in:1
> Progress:  Submitting:1
> Progress:  Submitted:1
> Progress:  Active:1
> Failed to transfer wrapper log from
> PTMap2-unmod-20090430-1742-tfabq6q4/info/r on TACC_LoneStar
> Progress:  Active:1
> Failed to transfer wrapper log from
> PTMap2-unmod-20090430-1742-tfabq6q4/info/t on TACC_LoneStar
> Progress:  Stage in:1
> Progress:  Active:1
> Failed to transfer wrapper log from
> PTMap2-unmod-20090430-1742-tfabq6q4/info/v on TACC_LoneStar
> Progress:  Failed:1
> Execution failed:
>         Exception in PTMap2:
> Arguments: [e04.mzXML, ./seqs-ecolik12/fasta02, inputs-unmod.txt,
> parameters.txt]
> Host: TACC_LoneStar
> Directory: PTMap2-unmod-20090430-1742-tfabq6q4/jobs/v/PTMap2-v7baq5aj
> stderr.txt:
> stdout.txt:
> ----
> Caused by:
>         Cannot submit job
> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:
> Cannot submit job
>         at
> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:145)
>         at
> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:99)
>         at
> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)
>         at
> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)
>         at
> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)
>         at
> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)
> Caused by: org.globus.gram.GramException: The gatekeeper failed to
> find the requested service
>         at org.globus.gram.Gram.checkHttpReply(Gram.java:137)
>         at org.globus.gram.Gram.request(Gram.java:342)
>         at org.globus.gram.GramJob.request(GramJob.java:262)
>         at
> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:133)
>         ... 5 more
> Cleaning up...
> Shutting down service at https://129.114.50.32:35257 <https://129.114.50.32:35257/> 
> Got channel MetaChannel: 13391897 -> GSSSChannel-null(1)
> - Done
> ////////////////////////
> 
> Chen, Yue
>
>




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