<HTML dir=ltr><HEAD><TITLE>RE: [Swift-devel] RE: [Swift-user] Execution error</TITLE>
<META http-equiv=Content-Type content="text/html; charset=unicode">
<META content="MSHTML 6.00.6000.16825" name=GENERATOR></HEAD>
<BODY>
<DIV id=idOWAReplyText53925 dir=ltr>
<DIV dir=ltr><FONT face=Arial color=#000000 size=2>Hi Mihael,</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2></FONT> </DIV>
<DIV dir=ltr><FONT face=Arial size=2>I tried and the error message is the same. I attached the following trace.</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2></FONT> </DIV>
<DIV dir=ltr><FONT face=Arial size=2>///////////////////////////////</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>[yuechen@communicado PTMap2]$ swift PTMap2-unmod.swift -sites.file sites.xml -tc.file tc.data<BR>Swift 0.9rc2 swift-r2860 cog-r2388</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>RunID: 20090430-1809-ppue84jc<BR>Progress:<BR>Progress: Stage in:1<BR>Progress: Stage in:1<BR>Progress: Stage in:1<BR>Progress: Submitting:1<BR>Progress: Submitting:1<BR>Progress: Submitted:1<BR>Progress: Active:1<BR>Failed to transfer wrapper log from PTMap2-unmod-20090430-1809-ppue84jc/info/m on TACC_LoneStar<BR>Progress: Active:1<BR>Failed to transfer wrapper log from PTMap2-unmod-20090430-1809-ppue84jc/info/o on TACC_LoneStar<BR>Progress: Stage in:1<BR>Progress: Active:1<BR>Failed to transfer wrapper log from PTMap2-unmod-20090430-1809-ppue84jc/info/q on TACC_LoneStar<BR>Progress: Failed:1<BR>Execution failed:<BR> Exception in PTMap2:<BR>Arguments: [e04.mzXML, ./seqs-ecolik12/fasta02, inputs-unmod.txt, parameters.txt]<BR>Host: TACC_LoneStar<BR>Directory: PTMap2-unmod-20090430-1809-ppue84jc/jobs/q/PTMap2-q3acr5aj<BR>stderr.txt:</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>stdout.txt:</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>----</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>Caused by:<BR> Cannot submit job<BR>org.globus.cog.abstraction.impl.common.task.TaskSubmissionException: Cannot submit job<BR> at org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:145)<BR> at org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:99)<BR> at org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)<BR> at org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)<BR> at org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)<BR> at org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)<BR>Caused by: org.globus.gram.GramException: The gatekeeper failed to find the requested service<BR> at org.globus.gram.Gram.checkHttpReply(Gram.java:137)<BR> at org.globus.gram.Gram.request(Gram.java:342)<BR> at org.globus.gram.GramJob.request(GramJob.java:262)<BR> at org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:133)<BR> ... 5 more</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>Cleaning up...<BR>Shutting down service at </FONT><A href="https://129.114.50.32:35904"><FONT face=Arial size=2>https://129.114.50.32:35904</FONT></A><BR><FONT face=Arial size=2>Got channel MetaChannel: 16618296 -> GSSSChannel-null(1)<BR>- Done<BR>//////////////////////////////////</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2></FONT> </DIV>
<DIV dir=ltr><FONT face=Arial size=2>My sites.xml for TACC Lonestar is :</FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2></FONT> </DIV>
<DIV dir=ltr><FONT face=Arial size=2> <pool handle="TACC_LoneStar"><BR> <gridftp url="gsiftp://tg-gridftp.lonestar.tacc.teragrid.org"/><BR> <execution provider="coaster" url="gatekeeper.lonestar.tacc.teragrid.org" jobManager="gt2:gt2:pbs"/><BR> <workdirectory>/tmp/scratch/yc/swiftwork</workdirectory><BR> </pool><BR></FONT></DIV>
<DIV dir=ltr><FONT face=Arial size=2>Thanks!</DIV></FONT>
<DIV dir=ltr><FONT face=Arial size=2></FONT> </DIV>
<DIV dir=ltr><FONT face=Arial size=2>Chen, Yue</FONT></DIV>
<DIV dir=ltr> </DIV></DIV>
<DIV dir=ltr><BR>
<HR tabIndex=-1>
<FONT face=Tahoma size=2><B>From:</B> Mihael Hategan [mailto:hategan@mcs.anl.gov]<BR><B>Sent:</B> Thu 4/30/2009 6:08 PM<BR><B>To:</B> Yue, Chen - BMD<BR><B>Cc:</B> Michael Wilde; swift-devel<BR><B>Subject:</B> RE: [Swift-devel] RE: [Swift-user] Execution error<BR></FONT><BR></DIV>
<DIV>
<P><FONT size=2>Odd. Try "gt2:gt2:pbs" instead of "gt2:gt2:PBS".<BR><BR>On Thu, 2009-04-30 at 17:57 -0500, Yue, Chen - BMD wrote:<BR>> Hi Mihael,<BR>> <BR>> The error message is different after I change from gt2:PBS to<BR>> gt2:gt2:PBS on TACC LoneStar. I attached the trace as following. I<BR>> don't know if there is still setup problem. Thank you very much!<BR>> <BR>> /////////////////////////<BR>> [yuechen@communicado PTMap2]$ swift PTMap2-unmod.swift -sites.file<BR>> sites.xml -tc.file tc.data<BR>> Swift 0.9rc2 swift-r2860 cog-r2388<BR>> RunID: 20090430-1742-tfabq6q4<BR>> Progress:<BR>> Progress: Stage in:1<BR>> Progress: Stage in:1<BR>> Progress: Stage in:1<BR>> Progress: Submitting:1<BR>> Progress: Submitted:1<BR>> Progress: Active:1<BR>> Failed to transfer wrapper log from<BR>> PTMap2-unmod-20090430-1742-tfabq6q4/info/r on TACC_LoneStar<BR>> Progress: Active:1<BR>> Failed to transfer wrapper log from<BR>> PTMap2-unmod-20090430-1742-tfabq6q4/info/t on TACC_LoneStar<BR>> Progress: Stage in:1<BR>> Progress: Active:1<BR>> Failed to transfer wrapper log from<BR>> PTMap2-unmod-20090430-1742-tfabq6q4/info/v on TACC_LoneStar<BR>> Progress: Failed:1<BR>> Execution failed:<BR>> Exception in PTMap2:<BR>> Arguments: [e04.mzXML, ./seqs-ecolik12/fasta02, inputs-unmod.txt,<BR>> parameters.txt]<BR>> Host: TACC_LoneStar<BR>> Directory: PTMap2-unmod-20090430-1742-tfabq6q4/jobs/v/PTMap2-v7baq5aj<BR>> stderr.txt:<BR>> stdout.txt:<BR>> ----<BR>> Caused by:<BR>> Cannot submit job<BR>> org.globus.cog.abstraction.impl.common.task.TaskSubmissionException:<BR>> Cannot submit job<BR>> at<BR>> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:145)<BR>> at<BR>> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submit(JobSubmissionTaskHandler.java:99)<BR>> at<BR>> org.globus.cog.abstraction.impl.common.AbstractTaskHandler.submit(AbstractTaskHandler.java:46)<BR>> at<BR>> org.globus.cog.abstraction.impl.common.task.ExecutionTaskHandler.submit(ExecutionTaskHandler.java:43)<BR>> at<BR>> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.startWorker(WorkerManager.java:221)<BR>> at<BR>> org.globus.cog.abstraction.coaster.service.job.manager.WorkerManager.run(WorkerManager.java:145)<BR>> Caused by: org.globus.gram.GramException: The gatekeeper failed to<BR>> find the requested service<BR>> at org.globus.gram.Gram.checkHttpReply(Gram.java:137)<BR>> at org.globus.gram.Gram.request(Gram.java:342)<BR>> at org.globus.gram.GramJob.request(GramJob.java:262)<BR>> at<BR>> org.globus.cog.abstraction.impl.execution.gt2.JobSubmissionTaskHandler.submitSingleJob(JobSubmissionTaskHandler.java:133)<BR>> ... 5 more<BR>> Cleaning up...<BR>> Shutting down service at <A href="https://129.114.50.32:35257/">https://129.114.50.32:35257</A><BR>> Got channel MetaChannel: 13391897 -> GSSSChannel-null(1)<BR>> - Done<BR>> ////////////////////////<BR>> <BR>> Chen, Yue<BR>><BR>><BR></FONT></P></DIV><DIV> </DIV><br><br>This email is intended only for the use of the individual or entity to which it is addressed and may contain information that is privileged and confidential. If the reader of this email message is not the intended recipient, you are hereby notified that any dissemination, distribution, or copying of this communication is prohibited. If you have received this email in error, please notify the sender and destroy/delete all copies of the transmittal. Thank you.<br></BODY></HTML>