[Swift-devel] recent karajan changes causing trouble

[Ben Clifford]

did you touch both the 1 molecule and 244 moleule .swift files to cause 
recompilation?

also, do you have the 1-molecule .swift, .xml and .kml files around?

On Thu, 5 Jul 2007, Veronika Nefedova wrote:

> my workflow doesn't work with recent changes. It worked fine for 1 molecule,
> but fails for 244 (right after compilation step, before submitting it to the
> grid). These are the errors:
> 
> 2007-07-05 13:37:51,294 DEBUG VDL2ExecutionContext Missing argument s11 for
> sys:element(out1, out2, out3, out4, in1, in2, in3, in4, in5, in6, in7, in8,
> s1, s2, s3, s4, s5, s6, s7, s8, s9, s10, s11)
> Missing argument s11 for sys:element(out1, out2, out3, out4, in1, in2, in3,
> in4, in5, in6, in7, in8, s1, s2, s3, s4, s5, s6, s7, s8, s9, s10, s11)
>        CHARMM3 @ MolDyn-244.kml, line: 209
>        vdl:mains @ MolDyn-244.kml, line: 583910
> 
>        at
> org.globus.cog.karajan.workflow.nodes.user.UserDefinedElement.prepareInstanceArguments(UserDefinedElement.java:196)
>        at
> org.globus.cog.karajan.workflow.nodes.user.UserDefinedElement.startBody(UserDefinedElement.java:170)
>        at
> org.globus.cog.karajan.workflow.nodes.user.SequentialImplicitExecutionUDE.startBody(SequentialImplicitExecutionUDE.java:55)
>        at
> org.globus.cog.karajan.workflow.nodes.user.SequentialImplicitExecutionUDE.childCompleted(SequentialImplicitExecutionUDE.java:82)
>        at
> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:33)
>        at
> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:334)
>        at
> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)
>        at
> org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:97)
>        at
> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:172)
>        at
> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:298)
>        at
> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
>        at
> org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192)
>        at
> org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:33)
>        at
> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:334)
>        at
> org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)
>        at
> org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:97)
>        at
> org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:172)
>        at
> org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:298)
>        at
> org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
>        at
> org.globus.cog.karajan.workflow.nodes.Parallel.notificationEvent(Parallel.java:90)
>        at
> org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:334)
> <snip>
> 
> a complete log is on terminable in ~nefedova/MolDyn-244-zvhy3me4scm61.log
> the MolDyn-244.* files are also there. Please note that this is exactly the
> same file (dtm) that worked before.
> 
> Nika
> 
> 
> On Jul 2, 2007, at 9:23 PM, Mihael Hategan wrote:
> 
> > Yup. Try now.
> > 
> > On Tue, 2007-07-03 at 06:38 +0530, Ben Clifford wrote:
> > > I get the below when I try to run a hello world workflow
> > > (examples/tutorial/q1.swift).
> > > 
> > > I think Nika also saw something that looks similar, with a different
> > > workflow.
> > > 
> > > This is with cog r1655.
> > > 
> > > I reverted my checkout to cog r1650 (svn merge -r1655:1650 .) and hello
> > > world runs ok (r1650 being before the most recent set of cog commits).
> > > 
> > > 
> > > $ swift -debug q1.swift
> > > Recompilation suppressed.
> > > 
> > > null
> > >        kernel:cache @ sys.xml, line: 3
> > > Caused by: java.lang.UnsupportedOperationException
> > >        at java.util.AbstractMap.put(AbstractMap.java:228)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.CacheNode.getTrackingArguments(CacheNode.java:153)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.CacheNode.post(CacheNode.java:77)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.PartialArgumentsContainer.nonArgChildCompleted(PartialArgumentsContainer.java:90)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.PartialArgumentsContainer.childCompleted(PartialArgumentsContainer.java:85)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.Sequential.notificationEvent(Sequential.java:33)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.CacheNode.notificationEvent(CacheNode.java:111)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.FlowNode.event(FlowNode.java:334)
> > >        at
> > > org.globus.cog.karajan.workflow.events.EventBus.send(EventBus.java:123)
> > >        at
> > > org.globus.cog.karajan.workflow.events.EventBus.sendHooked(EventBus.java:97)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.FlowNode.fireNotificationEvent(FlowNode.java:172)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.FlowNode.complete(FlowNode.java:298)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.FlowContainer.post(FlowContainer.java:58)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.Namespace.post(Namespace.java:40)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.AbstractSequentialWithArguments.childCompleted(AbstractSequentialWithArguments.java:192)
> > >        at
> > > org.globus.cog.karajan.workflow.nodes.PartialArgumentsContainer.nonArgChildCompleted(PartialArgumentsContainer.java:90)
> > > 
> > > 
> > 
> > _______________________________________________
> > Swift-devel mailing list
> > Swift-devel at ci.uchicago.edu
> > http://mail.ci.uchicago.edu/mailman/listinfo/swift-devel
> > 
>